Analysis of interatomic Contacts of Structural Units in PDB entry:
3QMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QMJ entry

There is 1 chain in PDB entry 3QMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1PRO 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3QMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed 310
Helix 2
2
A
26 43Right-handed alpha
Helix 3
3
A
63 73Right-handed alpha
Helix 4
4
A
81 93Right-handed alpha
Helix 5
5
A
107 112Right-handed alpha
Helix 6
6
A
113 116Right-handed 310
Helix 7
7
A
130 134Right-handed 310
Helix 8
8
A
141 161Right-handed alpha
Helix 9
9
A
167 173Right-handed alpha
Helix 10
10
A
181 183Right-handed 310
Helix 11
11
A
184 198Right-handed alpha
Helix 12
12
A
200 213Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3QMJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
11 16anti-parallel
Strand 3
A
48 53parallel
Strand 4
A
97 101parallel
Strand 5
A
118 122parallel
Strand 6
A
178 180parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
104 106parallel
Strand 3
A
126 128parallel
Strand 4
A
165 166anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il