Analysis of interatomic Contacts of Structural Units in PDB entry:
3QML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QML entry

There are 4 chains in PDB entry 3QML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 48VAL 424
B
 GLY 50LEU 425
C
 GLY 122PHE 406
D
 GLU 125GLN 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 3QML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 104Right-handed alpha
Helix 2
2
A
115 119Right-handed 310
Helix 3
3
A
126 135Right-handed alpha
Helix 4
4
A
161 181Right-handed alpha
Helix 5
5
A
197 211Right-handed alpha
Helix 6
6
A
221 229Right-handed alpha
Helix 7
7
A
274 295Right-handed alpha
Helix 8
8
A
297 300Right-handed 310
Helix 9
9
A
301 320Right-handed alpha
Helix 10
10
A
344 358Right-handed alpha
Helix 11
11
A
358 370Right-handed alpha
Helix 12
12
A
372 376Right-handed 310
Helix 13
13
A
383 387Right-handed 310
Helix 14
14
A
388 399Right-handed alpha
Helix 15
15
A
412 423Right-handed alpha
Helix 16
16
B
98 104Right-handed alpha
Helix 17
17
B
115 119Right-handed 310
Helix 18
18
B
126 135Right-handed alpha
Helix 19
19
B
161 179Right-handed alpha
Helix 20
20
B
197 210Right-handed alpha
Helix 21
21
B
221 229Right-handed alpha
Helix 22
22
B
274 295Right-handed alpha
Helix 23
23
B
297 300Right-handed 310
Helix 24
24
B
301 319Right-handed alpha
Helix 25
25
B
344 351Right-handed alpha
Helix 26
26
B
351 357Right-handed alpha
Helix 27
27
B
359 368Right-handed alpha
Helix 28
28
B
384 387Right-handed 310
Helix 29
29
B
388 399Right-handed alpha
Helix 30
30
B
412 424Right-handed alpha
Helix 31
31
C
126 140Right-handed alpha
Helix 32
32
C
144 159Right-handed alpha
Helix 33
33
C
160 162Right-handed 310
Helix 34
34
C
164 185Right-handed alpha
Helix 35
35
C
189 205Right-handed alpha
Helix 36
36
C
207 218Right-handed alpha
Helix 37
37
C
220 234Right-handed alpha
Helix 38
38
C
240 254Right-handed alpha
Helix 39
39
C
265 276Right-handed alpha
Helix 40
40
C
279 298Right-handed alpha
Helix 41
41
C
320 332Right-handed alpha
Helix 42
42
C
337 356Right-handed alpha
Helix 43
43
C
357 359Right-handed 310
Helix 44
44
C
362 381Right-handed alpha
Helix 45
45
C
388 403Right-handed alpha
Helix 46
46
D
126 136Right-handed alpha
Helix 47
47
D
144 163Right-handed alpha
Helix 48
48
D
164 185Right-handed alpha
Helix 49
49
D
189 205Right-handed alpha
Helix 50
50
D
209 218Right-handed alpha
Helix 51
51
D
220 234Right-handed alpha
Helix 52
52
D
240 254Right-handed alpha
Helix 53
53
D
257 264Right-handed 310
Helix 54
54
D
265 275Right-handed alpha
Helix 55
55
D
279 295Right-handed alpha
Helix 56
56
D
305 317Right-handed alpha
Helix 57
57
D
320 331Right-handed alpha
Helix 58
58
D
337 356Right-handed alpha
Helix 59
59
D
357 359Right-handed 310
Helix 60
60
D
364 381Right-handed alpha
Helix 61
61
D
389 405Right-handed alpha
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There are 13 sheets in PDB entry 3QML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
84 85anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
53 57anti-parallel
Strand 4
A
187 192parallel
Strand 5
A
214 220parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
88 90anti-parallel
Strand 3
A
112 113anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
146 152anti-parallel
Strand 3
A
157 160anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 270first strand
Strand 2
A
250 258anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
378 382parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 333first strand
Strand 2
A
336 343anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
84 85anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
53 57anti-parallel
Strand 4
B
188 192parallel
Strand 5
B
219 220parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
88 90anti-parallel
Strand 3
B
112 113anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
146 152anti-parallel
Strand 3
B
157 160anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
250 257anti-parallel
Strand 3
B
267 270anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
250 257anti-parallel
Strand 3
B
240 245anti-parallel
Strand 4
B
378 382parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 333first strand
Strand 2
B
336 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il