Analysis of interatomic Contacts of Structural Units in PDB entry:
3QMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QMV entry

There are 4 chains in PDB entry 3QMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 9LEU 261
B
 SER 8LEU 261
C
 ASP -7LEU 261
D
 ASP -7LEU 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 3QMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
44 49Right-handed 310
Helix 3
3
A
50 56Right-handed alpha
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
80 95Right-handed alpha
Helix 6
6
A
107 123Right-handed alpha
Helix 7
7
A
138 142Right-handed 310
Helix 8
8
A
146 150Right-handed 310
Helix 9
9
A
151 163Right-handed alpha
Helix 10
10
A
179 192Right-handed alpha
Helix 11
11
A
217 223Right-handed alpha
Helix 12
12
A
224 228Right-handed 310
Helix 13
13
A
242 246Right-handed 310
Helix 14
14
A
247 259Right-handed alpha
Helix 15
15
B
9 14Right-handed alpha
Helix 16
16
B
44 49Right-handed 310
Helix 17
17
B
50 56Right-handed alpha
Helix 18
18
B
69 73Right-handed 310
Helix 19
19
B
80 95Right-handed alpha
Helix 20
20
B
107 123Right-handed alpha
Helix 21
21
B
138 142Right-handed 310
Helix 22
22
B
146 150Right-handed 310
Helix 23
23
B
151 163Right-handed alpha
Helix 24
24
B
167 170Right-handed 310
Helix 25
25
B
171 192Right-handed alpha
Helix 26
26
B
217 223Right-handed alpha
Helix 27
27
B
224 228Right-handed 310
Helix 28
28
B
242 245Right-handed 310
Helix 29
29
B
246 261Right-handed alpha
Helix 30
30
C
-5 -1Right-handed 310
Helix 31
31
C
4 8Right-handed 310
Helix 32
32
C
9 14Right-handed alpha
Helix 33
33
C
44 49Right-handed 310
Helix 34
34
C
50 56Right-handed alpha
Helix 35
35
C
69 73Right-handed 310
Helix 36
36
C
80 95Right-handed alpha
Helix 37
37
C
107 123Right-handed alpha
Helix 38
38
C
138 142Right-handed 310
Helix 39
39
C
146 150Right-handed 310
Helix 40
40
C
151 163Right-handed alpha
Helix 41
41
C
167 172Right-handed alpha
Helix 42
42
C
173 178Right-handed alpha
Helix 43
43
C
179 192Right-handed alpha
Helix 44
44
C
217 223Right-handed alpha
Helix 45
45
C
224 228Right-handed 310
Helix 46
46
C
242 246Right-handed 310
Helix 47
47
C
247 261Right-handed alpha
Helix 48
48
D
-5 -1Right-handed 310
Helix 49
49
D
5 8Right-handed 310
Helix 50
50
D
9 14Right-handed alpha
Helix 51
51
D
44 49Right-handed 310
Helix 52
52
D
50 56Right-handed alpha
Helix 53
53
D
69 73Right-handed 310
Helix 54
54
D
80 95Right-handed alpha
Helix 55
55
D
107 123Right-handed alpha
Helix 56
56
D
138 142Right-handed 310
Helix 57
57
D
146 150Right-handed 310
Helix 58
58
D
151 163Right-handed alpha
Helix 59
59
D
167 172Right-handed alpha
Helix 60
60
D
172 178Right-handed alpha
Helix 61
61
D
179 192Right-handed alpha
Helix 62
62
D
217 223Right-handed alpha
Helix 63
63
D
224 228Right-handed 310
Helix 64
64
D
242 246Right-handed 310
Helix 65
65
D
247 260Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3QMV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
33 38parallel
Strand 3
A
101 106parallel
Strand 4
A
131 134parallel
Strand 5
A
205 212parallel
Strand 6
A
232 240parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
34 38parallel
Strand 3
B
101 106parallel
Strand 4
B
131 134parallel
Strand 5
B
205 212parallel
Strand 6
B
232 240parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
33 38parallel
Strand 3
C
101 106parallel
Strand 4
C
131 134parallel
Strand 5
C
205 210parallel
Strand 6
C
232 237parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
33 38parallel
Strand 3
D
101 106parallel
Strand 4
D
131 134parallel
Strand 5
D
205 210parallel
Strand 6
D
232 237parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il