Analysis of interatomic Contacts of Structural Units in PDB entry:
3QMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QMW entry

There are 4 chains in PDB entry 3QMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11LEU 261
B
 SER 11LEU 261
C
 LEU 6LEU 261
D
 SER 11LEU 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3QMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 49Right-handed 310
Helix 2
2
A
50 56Right-handed alpha
Helix 3
3
A
69 73Right-handed 310
Helix 4
4
A
80 95Right-handed alpha
Helix 5
5
A
107 123Right-handed alpha
Helix 6
6
A
138 142Right-handed 310
Helix 7
7
A
146 150Right-handed 310
Helix 8
8
A
151 162Right-handed alpha
Helix 9
9
A
175 192Right-handed alpha
Helix 10
10
A
217 223Right-handed alpha
Helix 11
11
A
224 228Right-handed 310
Helix 12
12
A
246 261Right-handed alpha
Helix 13
13
B
44 49Right-handed 310
Helix 14
14
B
50 56Right-handed alpha
Helix 15
15
B
69 73Right-handed 310
Helix 16
16
B
80 95Right-handed alpha
Helix 17
17
B
107 124Right-handed alpha
Helix 18
18
B
138 142Right-handed 310
Helix 19
19
B
151 163Right-handed alpha
Helix 20
20
B
167 172Right-handed alpha
Helix 21
21
B
172 193Right-handed alpha
Helix 22
22
B
217 223Right-handed alpha
Helix 23
23
B
224 228Right-handed 310
Helix 24
24
B
242 246Right-handed 310
Helix 25
25
B
247 259Right-handed alpha
Helix 26
26
B
260 261Right-handed 310
Helix 27
27
C
6 11Right-handed 310
Helix 28
28
C
44 48Right-handed 310
Helix 29
29
C
50 55Right-handed alpha
Helix 30
30
C
69 73Right-handed 310
Helix 31
31
C
80 95Right-handed alpha
Helix 32
32
C
107 124Right-handed alpha
Helix 33
33
C
138 142Right-handed 310
Helix 34
34
C
146 150Right-handed 310
Helix 35
35
C
151 161Right-handed alpha
Helix 36
36
C
179 192Right-handed alpha
Helix 37
37
C
217 223Right-handed alpha
Helix 38
38
C
224 228Right-handed 310
Helix 39
39
C
242 246Right-handed 310
Helix 40
40
C
247 260Right-handed alpha
Helix 41
41
D
44 49Right-handed 310
Helix 42
42
D
50 56Right-handed alpha
Helix 43
43
D
69 73Right-handed 310
Helix 44
44
D
80 94Right-handed alpha
Helix 45
45
D
107 123Right-handed alpha
Helix 46
46
D
138 142Right-handed 310
Helix 47
47
D
151 162Right-handed alpha
Helix 48
48
D
170 179Right-handed alpha
Helix 49
49
D
179 192Right-handed alpha
Helix 50
50
D
217 223Right-handed alpha
Helix 51
51
D
224 228Right-handed 310
Helix 52
52
D
242 246Right-handed 310
Helix 53
53
D
247 261Right-handed alpha
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There are 4 sheets in PDB entry 3QMW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
33 38parallel
Strand 3
A
101 106parallel
Strand 4
A
131 134parallel
Strand 5
A
205 210parallel
Strand 6
A
232 237parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
33 38parallel
Strand 3
B
101 106parallel
Strand 4
B
130 134parallel
Strand 5
B
205 210parallel
Strand 6
B
232 237parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 63first strand
Strand 2
C
33 38parallel
Strand 3
C
101 106parallel
Strand 4
C
131 134parallel
Strand 5
C
205 212parallel
Strand 6
C
232 240parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 63first strand
Strand 2
D
33 38parallel
Strand 3
D
101 106parallel
Strand 4
D
131 134parallel
Strand 5
D
205 210parallel
Strand 6
D
232 237parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il