Analysis of interatomic Contacts of Structural Units in PDB entry:
3QP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QP5 entry

There are 4 chains in PDB entry 3QP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9PRO 259
B
 ALA 14PRO 258
C
 PRO 11PRO 258
D
 ARG 10LEU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3QP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
36 48Right-handed alpha
Helix 3
3
A
81 91Right-handed alpha
Helix 4
4
A
111 116Right-handed alpha
Helix 5
5
A
120 131Right-handed alpha
Helix 6
6
A
160 163Right-handed 310
Helix 7
7
A
164 186Right-handed alpha
Helix 8
8
A
199 210Right-handed alpha
Helix 9
9
A
214 220Right-handed alpha
Helix 10
10
A
224 240Right-handed alpha
Helix 11
11
A
244 252Right-handed alpha
Helix 12
12
B
20 31Right-handed alpha
Helix 13
13
B
36 48Right-handed alpha
Helix 14
14
B
82 91Right-handed alpha
Helix 15
15
B
111 116Right-handed alpha
Helix 16
16
B
120 133Right-handed alpha
Helix 17
17
B
160 163Right-handed 310
Helix 18
18
B
164 187Right-handed alpha
Helix 19
19
B
199 210Right-handed alpha
Helix 20
20
B
214 223Right-handed alpha
Helix 21
21
B
225 241Right-handed alpha
Helix 22
22
B
244 252Right-handed alpha
Helix 23
23
B
252 257Right-handed alpha
Helix 24
24
C
17 32Right-handed alpha
Helix 25
25
C
36 51Right-handed alpha
Helix 26
26
C
81 91Right-handed alpha
Helix 27
27
C
111 116Right-handed alpha
Helix 28
28
C
120 131Right-handed alpha
Helix 29
29
C
160 163Right-handed 310
Helix 30
30
C
164 187Right-handed alpha
Helix 31
31
C
199 210Right-handed alpha
Helix 32
32
C
214 223Right-handed alpha
Helix 33
33
C
225 241Right-handed alpha
Helix 34
34
C
244 252Right-handed alpha
Helix 35
35
C
252 257Right-handed alpha
Helix 36
36
D
17 31Right-handed alpha
Helix 37
37
D
36 48Right-handed alpha
Helix 38
38
D
81 91Right-handed alpha
Helix 39
39
D
110 116Right-handed alpha
Helix 40
40
D
120 131Right-handed alpha
Helix 41
41
D
146 148Right-handed 310
Helix 42
42
D
160 163Right-handed 310
Helix 43
43
D
164 185Right-handed alpha
Helix 44
44
D
199 210Right-handed alpha
Helix 45
45
D
214 223Right-handed alpha
Helix 46
46
D
225 241Right-handed alpha
Helix 47
47
D
244 252Right-handed alpha
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There are 4 sheets in PDB entry 3QP5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 77first strand
Strand 2
A
56 63anti-parallel
Strand 3
A
150 157anti-parallel
Strand 4
A
138 145anti-parallel
Strand 5
A
109 110anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
58 62anti-parallel
Strand 3
B
150 157anti-parallel
Strand 4
B
138 145anti-parallel
Strand 5
B
109 110anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 76first strand
Strand 2
C
56 63anti-parallel
Strand 3
C
150 157anti-parallel
Strand 4
C
138 144anti-parallel
Strand 5
C
109 110anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 75first strand
Strand 2
D
56 63anti-parallel
Strand 3
D
150 156anti-parallel
Strand 4
D
139 145anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il