Analysis of interatomic Contacts of Structural Units in PDB entry:
3QP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QP8 entry

There are 4 chains in PDB entry 3QP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9ASN 187
B
 GLY 4ASN 187
C
 MET 7ASN 187
D
 GLY 4ASN 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3QP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
36 49Right-handed alpha
Helix 3
3
A
81 91Right-handed alpha
Helix 4
4
A
92 96Right-handed 310
Helix 5
5
A
97 102Right-handed 310
Helix 6
6
A
111 117Right-handed alpha
Helix 7
7
A
120 132Right-handed alpha
Helix 8
8
A
164 187Right-handed alpha
Helix 9
9
B
17 32Right-handed alpha
Helix 10
10
B
36 49Right-handed alpha
Helix 11
11
B
81 91Right-handed alpha
Helix 12
12
B
92 96Right-handed 310
Helix 13
13
B
97 102Right-handed 310
Helix 14
14
B
111 116Right-handed alpha
Helix 15
15
B
120 132Right-handed alpha
Helix 16
16
B
160 163Right-handed 310
Helix 17
17
B
164 187Right-handed alpha
Helix 18
18
C
17 32Right-handed alpha
Helix 19
19
C
36 48Right-handed alpha
Helix 20
20
C
81 91Right-handed alpha
Helix 21
21
C
92 96Right-handed 310
Helix 22
22
C
97 102Right-handed 310
Helix 23
23
C
111 118Right-handed alpha
Helix 24
24
C
120 133Right-handed alpha
Helix 25
25
C
164 187Right-handed alpha
Helix 26
26
D
17 32Right-handed alpha
Helix 27
27
D
36 49Right-handed alpha
Helix 28
28
D
81 91Right-handed alpha
Helix 29
29
D
92 96Right-handed 310
Helix 30
30
D
97 102Right-handed 310
Helix 31
31
D
111 116Right-handed alpha
Helix 32
32
D
120 133Right-handed alpha
Helix 33
33
D
164 187Right-handed alpha
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There are 4 sheets in PDB entry 3QP8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 77first strand
Strand 2
A
55 63anti-parallel
Strand 3
A
150 157anti-parallel
Strand 4
A
138 145anti-parallel
Strand 5
A
109 110anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 77first strand
Strand 2
B
56 63anti-parallel
Strand 3
B
150 157anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
109 110anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 77first strand
Strand 2
C
55 63anti-parallel
Strand 3
C
150 157anti-parallel
Strand 4
C
138 144anti-parallel
Strand 5
C
109 110anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 77first strand
Strand 2
D
55 63anti-parallel
Strand 3
D
150 157anti-parallel
Strand 4
D
138 145anti-parallel
Strand 5
D
109 110anti-parallel
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