Analysis of interatomic Contacts of Structural Units in PDB entry:
3QP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QP9 entry

There are 3 chains in PDB entry 3QP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3GLU 500
B
 ASP 5ARG 495
C
 VAL 3LEU 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 3QP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 6Right-handed 310
Helix 2
2
A
38 40Right-handed 310
Helix 3
3
A
43 53Right-handed alpha
Helix 4
4
A
67 82Right-handed alpha
Helix 5
5
A
93 96Right-handed 310
Helix 6
6
A
108 124Right-handed alpha
Helix 7
7
A
148 165Right-handed alpha
Helix 8
8
A
180 192Right-handed alpha
Helix 9
9
A
240 254Right-handed alpha
Helix 10
10
A
282 293Right-handed alpha
Helix 11
11
A
305 315Right-handed alpha
Helix 12
12
A
341 366Right-handed alpha
Helix 13
13
A
391 406Right-handed alpha
Helix 14
14
A
426 430Right-handed 310
Helix 15
15
A
431 440Right-handed alpha
Helix 16
16
A
446 461Right-handed alpha
Helix 17
17
A
471 481Right-handed alpha
Helix 18
18
A
491 496Right-handed alpha
Helix 19
19
B
38 40Right-handed 310
Helix 20
20
B
43 53Right-handed alpha
Helix 21
21
B
67 82Right-handed alpha
Helix 22
22
B
93 96Right-handed 310
Helix 23
23
B
108 124Right-handed alpha
Helix 24
24
B
151 165Right-handed alpha
Helix 25
25
B
180 193Right-handed alpha
Helix 26
26
B
240 253Right-handed alpha
Helix 27
27
B
284 293Right-handed alpha
Helix 28
28
B
305 315Right-handed alpha
Helix 29
29
B
341 364Right-handed alpha
Helix 30
30
B
391 406Right-handed alpha
Helix 31
31
B
426 430Right-handed 310
Helix 32
32
B
435 440Right-handed alpha
Helix 33
33
B
446 460Right-handed alpha
Helix 34
34
B
471 480Right-handed alpha
Helix 35
35
C
3 6Right-handed 310
Helix 36
36
C
38 42Right-handed 310
Helix 37
37
C
43 52Right-handed alpha
Helix 38
38
C
67 81Right-handed alpha
Helix 39
39
C
93 96Right-handed 310
Helix 40
40
C
108 125Right-handed alpha
Helix 41
41
C
148 165Right-handed alpha
Helix 42
42
C
180 193Right-handed alpha
Helix 43
43
C
240 254Right-handed alpha
Helix 44
44
C
282 293Right-handed alpha
Helix 45
45
C
305 315Right-handed alpha
Helix 46
46
C
341 364Right-handed alpha
Helix 47
47
C
391 406Right-handed alpha
Helix 48
48
C
426 429Right-handed 310
Helix 49
49
C
430 441Right-handed alpha
Helix 50
50
C
446 460Right-handed alpha
Helix 51
51
C
471 480Right-handed alpha
Helix 52
52
D
43 53Right-handed alpha
Helix 53
53
D
67 81Right-handed alpha
Helix 54
54
D
93 96Right-handed 310
Helix 55
55
D
108 124Right-handed alpha
Helix 56
56
D
148 150Right-handed 310
Helix 57
57
D
151 165Right-handed alpha
Helix 58
58
D
180 192Right-handed alpha
Helix 59
59
D
240 254Right-handed alpha
Helix 60
60
D
282 293Right-handed alpha
Helix 61
61
D
305 315Right-handed alpha
Helix 62
62
D
336 340Right-handed 310
Helix 63
63
D
341 367Right-handed alpha
Helix 64
64
D
383 385Right-handed 310
Helix 65
65
D
391 406Right-handed alpha
Helix 66
66
D
430 441Right-handed alpha
Helix 67
67
D
446 460Right-handed alpha
Helix 68
68
D
471 480Right-handed alpha
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There are 4 sheets in PDB entry 3QP9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 62first strand
Strand 2
A
30 36parallel
Strand 3
A
88 91parallel
Strand 4
A
130 135parallel
Strand 5
A
169 175parallel
Strand 6
A
199 203parallel
Strand 7
A
206 214anti-parallel
Strand 8
A
8 15anti-parallel
Strand 9
A
464 467anti-parallel
Strand 10
A
414 420parallel
Strand 11
A
375 381parallel
Strand 12
A
322 327parallel
Strand 13
A
232 235parallel
Strand 14
A
257 262parallel
Strand 15
A
295 300parallel
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There are 15 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 62first strand
Strand 2
B
30 36parallel
Strand 3
B
88 91parallel
Strand 4
B
130 135parallel
Strand 5
B
169 175parallel
Strand 6
B
199 203parallel
Strand 7
B
206 214anti-parallel
Strand 8
B
8 15anti-parallel
Strand 9
B
464 467anti-parallel
Strand 10
B
414 420parallel
Strand 11
B
375 381parallel
Strand 12
B
322 327parallel
Strand 13
B
232 235parallel
Strand 14
B
257 262parallel
Strand 15
B
295 300parallel
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There are 15 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 62first strand
Strand 2
C
30 36parallel
Strand 3
C
88 91parallel
Strand 4
C
130 135parallel
Strand 5
C
169 175parallel
Strand 6
C
199 203parallel
Strand 7
C
206 214anti-parallel
Strand 8
C
8 15anti-parallel
Strand 9
C
464 467anti-parallel
Strand 10
C
414 420parallel
Strand 11
C
375 381parallel
Strand 12
C
322 327parallel
Strand 13
C
232 235parallel
Strand 14
C
257 262parallel
Strand 15
C
295 300parallel
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There are 15 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 62first strand
Strand 2
D
30 36parallel
Strand 3
D
88 91parallel
Strand 4
D
130 135parallel
Strand 5
D
169 175parallel
Strand 6
D
199 203parallel
Strand 7
D
206 214anti-parallel
Strand 8
D
8 15anti-parallel
Strand 9
D
464 467anti-parallel
Strand 10
D
414 420parallel
Strand 11
D
375 381parallel
Strand 12
D
322 327parallel
Strand 13
D
232 235parallel
Strand 14
D
257 262parallel
Strand 15
D
295 300parallel
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