Analysis of interatomic Contacts of Structural Units in PDB entry:
3QPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QPY entry

There are 4 chains in PDB entry 3QPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 276
B
 MET 1THR 278
C
 MET 1LEU 277
D
 MET 1ILE 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 3QPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 46Right-handed alpha
Helix 2
2
A
69 86Right-handed alpha
Helix 3
3
A
95 97Right-handed 310
Helix 4
4
A
98 106Right-handed alpha
Helix 5
5
A
112 116Right-handed 310
Helix 6
6
A
118 129Right-handed alpha
Helix 7
7
A
141 143Right-handed 310
Helix 8
8
A
144 155Right-handed alpha
Helix 9
9
A
177 188Right-handed alpha
Helix 10
10
A
197 201Right-handed alpha
Helix 11
11
A
214 227Right-handed alpha
Helix 12
12
A
255 273Right-handed alpha
Helix 13
13
B
27 46Right-handed alpha
Helix 14
14
B
70 86Right-handed alpha
Helix 15
15
B
95 97Right-handed 310
Helix 16
16
B
98 104Right-handed alpha
Helix 17
17
B
112 116Right-handed 310
Helix 18
18
B
118 128Right-handed alpha
Helix 19
19
B
141 143Right-handed 310
Helix 20
20
B
144 155Right-handed alpha
Helix 21
21
B
179 188Right-handed alpha
Helix 22
22
B
197 201Right-handed alpha
Helix 23
23
B
214 227Right-handed alpha
Helix 24
24
B
255 273Right-handed alpha
Helix 25
25
C
27 46Right-handed alpha
Helix 26
26
C
70 86Right-handed alpha
Helix 27
27
C
95 97Right-handed 310
Helix 28
28
C
98 104Right-handed alpha
Helix 29
29
C
112 116Right-handed 310
Helix 30
30
C
118 128Right-handed alpha
Helix 31
31
C
141 143Right-handed 310
Helix 32
32
C
144 155Right-handed alpha
Helix 33
33
C
179 188Right-handed alpha
Helix 34
34
C
198 201Right-handed 310
Helix 35
35
C
215 227Right-handed alpha
Helix 36
36
C
253 255Right-handed 310
Helix 37
37
C
256 273Right-handed alpha
Helix 38
38
D
27 46Right-handed alpha
Helix 39
39
D
69 86Right-handed alpha
Helix 40
40
D
95 97Right-handed 310
Helix 41
41
D
98 106Right-handed alpha
Helix 42
42
D
112 116Right-handed 310
Helix 43
43
D
118 128Right-handed alpha
Helix 44
44
D
141 143Right-handed 310
Helix 45
45
D
144 155Right-handed alpha
Helix 46
46
D
178 188Right-handed alpha
Helix 47
47
D
198 202Right-handed 310
Helix 48
48
D
215 227Right-handed alpha
Helix 49
49
D
255 274Right-handed alpha
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There are 12 sheets in PDB entry 3QPY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
8 10anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 24first strand
Strand 2
A
49 54parallel
Strand 3
A
89 92parallel
Strand 4
A
108 111parallel
Strand 5
A
131 135parallel
Strand 6
A
160 164parallel
Strand 7
A
193 196parallel
Strand 8
A
232 234parallel
Strand 9
A
17 24parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
174 175anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
8 10anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 24first strand
Strand 2
B
49 54parallel
Strand 3
B
89 92parallel
Strand 4
B
108 111parallel
Strand 5
B
131 135parallel
Strand 6
B
160 164parallel
Strand 7
B
193 196parallel
Strand 8
B
232 234parallel
Strand 9
B
17 24parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
174 175anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
8 10anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 24first strand
Strand 2
C
49 54parallel
Strand 3
C
89 92parallel
Strand 4
C
108 111parallel
Strand 5
C
131 135parallel
Strand 6
C
160 164parallel
Strand 7
C
193 196parallel
Strand 8
C
232 236parallel
Strand 9
C
17 24parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
167 168first strand
Strand 2
C
174 175anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
8 10anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 24first strand
Strand 2
D
49 54parallel
Strand 3
D
89 92parallel
Strand 4
D
108 111parallel
Strand 5
D
131 135parallel
Strand 6
D
160 164parallel
Strand 7
D
193 196parallel
Strand 8
D
232 234parallel
Strand 9
D
17 24parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 168first strand
Strand 2
D
174 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il