Analysis of interatomic Contacts of Structural Units in PDB entry:
3QQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QQ5 entry

There is 1 chain in PDB entry 3QQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -1PHE 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3QQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 87Right-handed alpha
Helix 2
2
A
101 114Right-handed alpha
Helix 3
3
A
133 139Right-handed alpha
Helix 4
4
A
160 169Right-handed alpha
Helix 5
5
A
204 217Right-handed alpha
Helix 6
6
A
228 236Right-handed alpha
Helix 7
7
A
248 256Right-handed alpha
Helix 8
8
A
266 274Right-handed alpha
Helix 9
9
A
277 286Right-handed alpha
Helix 10
10
A
314 324Right-handed alpha
Helix 11
11
A
340 345Right-handed alpha
Helix 12
12
A
359 373Right-handed alpha
Helix 13
13
A
380 387Right-handed alpha
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There are 3 sheets in PDB entry 3QQ5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
58 64anti-parallel
Strand 3
A
10 15parallel
Strand 4
A
91 95parallel
Strand 5
A
118 121parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
220 223parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 333first strand
Strand 2
A
295 299parallel
Strand 3
A
349 352parallel
Strand 4
A
377 379parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il