Analysis of interatomic Contacts of Structural Units in PDB entry:
3QQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QQW entry

There are 5 chains in PDB entry 3QQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 16PRO 321
B
 ASN 8PRO 321
C
 HIS 6PRO 321
D
 PRO 19PRO 321
E
 HIS 6SER 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 3QQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 45Right-handed alpha
Helix 2
2
A
54 58Right-handed alpha
Helix 3
3
A
62 76Right-handed alpha
Helix 4
4
A
95 107Right-handed alpha
Helix 5
5
A
121 139Right-handed alpha
Helix 6
6
A
153 159Right-handed alpha
Helix 7
7
A
159 164Right-handed alpha
Helix 8
8
A
175 182Right-handed alpha
Helix 9
9
A
188 193Right-handed 310
Helix 10
10
A
195 199Right-handed 310
Helix 11
11
A
200 217Right-handed alpha
Helix 12
12
A
231 247Right-handed alpha
Helix 13
13
A
255 257Right-handed 310
Helix 14
14
A
258 267Right-handed alpha
Helix 15
15
A
269 278Right-handed alpha
Helix 16
16
A
302 316Right-handed alpha
Helix 17
17
B
30 45Right-handed alpha
Helix 18
18
B
62 76Right-handed alpha
Helix 19
19
B
95 107Right-handed alpha
Helix 20
20
B
121 139Right-handed alpha
Helix 21
21
B
153 159Right-handed alpha
Helix 22
22
B
159 164Right-handed alpha
Helix 23
23
B
175 182Right-handed alpha
Helix 24
24
B
188 193Right-handed 310
Helix 25
25
B
195 199Right-handed 310
Helix 26
26
B
200 216Right-handed alpha
Helix 27
27
B
231 245Right-handed alpha
Helix 28
28
B
255 257Right-handed 310
Helix 29
29
B
258 267Right-handed alpha
Helix 30
30
B
269 281Right-handed alpha
Helix 31
31
B
304 316Right-handed alpha
Helix 32
32
C
7 12Right-handed alpha
Helix 33
33
C
30 45Right-handed alpha
Helix 34
34
C
62 76Right-handed alpha
Helix 35
35
C
95 107Right-handed alpha
Helix 36
36
C
121 139Right-handed alpha
Helix 37
37
C
153 159Right-handed alpha
Helix 38
38
C
159 164Right-handed alpha
Helix 39
39
C
175 182Right-handed alpha
Helix 40
40
C
188 193Right-handed 310
Helix 41
41
C
195 199Right-handed 310
Helix 42
42
C
200 217Right-handed alpha
Helix 43
43
C
231 245Right-handed alpha
Helix 44
44
C
255 257Right-handed 310
Helix 45
45
C
258 267Right-handed alpha
Helix 46
46
C
269 283Right-handed alpha
Helix 47
47
C
302 316Right-handed alpha
Helix 48
48
D
30 45Right-handed alpha
Helix 49
49
D
62 76Right-handed alpha
Helix 50
50
D
95 107Right-handed alpha
Helix 51
51
D
121 139Right-handed alpha
Helix 52
52
D
153 159Right-handed alpha
Helix 53
53
D
159 164Right-handed alpha
Helix 54
54
D
175 182Right-handed alpha
Helix 55
55
D
188 193Right-handed 310
Helix 56
56
D
195 199Right-handed 310
Helix 57
57
D
200 217Right-handed alpha
Helix 58
58
D
231 245Right-handed alpha
Helix 59
59
D
255 257Right-handed 310
Helix 60
60
D
258 266Right-handed alpha
Helix 61
61
D
269 279Right-handed alpha
Helix 62
62
D
302 316Right-handed alpha
Helix 63
63
E
7 12Right-handed alpha
Helix 64
64
E
30 45Right-handed alpha
Helix 65
65
E
62 76Right-handed alpha
Helix 66
66
E
95 107Right-handed alpha
Helix 67
67
E
121 139Right-handed alpha
Helix 68
68
E
153 159Right-handed alpha
Helix 69
69
E
159 164Right-handed alpha
Helix 70
70
E
175 182Right-handed alpha
Helix 71
71
E
188 193Right-handed 310
Helix 72
72
E
195 199Right-handed 310
Helix 73
73
E
200 217Right-handed alpha
Helix 74
74
E
231 245Right-handed alpha
Helix 75
75
E
255 257Right-handed 310
Helix 76
76
E
258 267Right-handed alpha
Helix 77
77
E
269 282Right-handed alpha
Helix 78
78
E
302 316Right-handed alpha
Helix 79
79
F
30 45Right-handed alpha
Helix 80
80
F
62 76Right-handed alpha
Helix 81
81
F
95 107Right-handed alpha
Helix 82
82
F
121 139Right-handed alpha
Helix 83
83
F
153 159Right-handed alpha
Helix 84
84
F
159 164Right-handed alpha
Helix 85
85
F
175 182Right-handed alpha
Helix 86
86
F
188 193Right-handed 310
Helix 87
87
F
195 199Right-handed 310
Helix 88
88
F
200 216Right-handed alpha
Helix 89
89
F
231 247Right-handed alpha
Helix 90
90
F
255 257Right-handed 310
Helix 91
91
F
258 267Right-handed alpha
Helix 92
92
F
269 279Right-handed alpha
Helix 93
93
F
302 316Right-handed alpha
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There are 6 sheets in PDB entry 3QQW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
48 53parallel
Strand 3
A
84 87parallel
Strand 4
A
114 116parallel
Strand 5
A
147 151parallel
Strand 6
A
169 174parallel
Strand 7
A
220 223parallel
Strand 8
A
250 253parallel
Strand 9
A
24 28parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
48 53parallel
Strand 3
B
84 87parallel
Strand 4
B
114 116parallel
Strand 5
B
147 151parallel
Strand 6
B
169 174parallel
Strand 7
B
220 223parallel
Strand 8
B
250 253parallel
Strand 9
B
24 28parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 28first strand
Strand 2
C
48 53parallel
Strand 3
C
84 87parallel
Strand 4
C
114 116parallel
Strand 5
C
147 151parallel
Strand 6
C
169 174parallel
Strand 7
C
220 223parallel
Strand 8
C
250 253parallel
Strand 9
C
24 28parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 28first strand
Strand 2
D
48 53parallel
Strand 3
D
84 87parallel
Strand 4
D
114 116parallel
Strand 5
D
147 151parallel
Strand 6
D
169 174parallel
Strand 7
D
220 223parallel
Strand 8
D
250 253parallel
Strand 9
D
24 28parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 28first strand
Strand 2
E
48 53parallel
Strand 3
E
84 87parallel
Strand 4
E
114 116parallel
Strand 5
E
147 151parallel
Strand 6
E
169 174parallel
Strand 7
E
220 223parallel
Strand 8
E
250 253parallel
Strand 9
E
24 28parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
24 28first strand
Strand 2
F
48 53parallel
Strand 3
F
84 87parallel
Strand 4
F
114 116parallel
Strand 5
F
147 151parallel
Strand 6
F
169 174parallel
Strand 7
F
220 223parallel
Strand 8
F
250 253parallel
Strand 9
F
24 28parallel
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