Analysis of interatomic Contacts of Structural Units in PDB entry:
3QS9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3QS9 entry

There are 8 chains in PDB entry 3QS9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	CYS 132
B	ASP 3	CYS 132
C	ASP 3	CYS 132
D	ASP 3	CYS 132
E	ALA 79	LEU 529
F	THR 167	LEU 529
G	ALA 79	LEU 529
H	ALA 79	LEU 529

There are 32 helices in PDB entry 3QS9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	24	Right-handed alpha
Helix 2	2	A	44	63	Right-handed alpha
Helix 3	3	A	65	80	Right-handed alpha
Helix 4	4	A	81	85	Right-handed 310
Helix 5	5	A	101	116	Right-handed alpha
Helix 6	6	A	124	129	Right-handed 310
Helix 7	7	B	14	24	Right-handed alpha
Helix 8	8	B	44	62	Right-handed alpha
Helix 9	9	B	65	80	Right-handed alpha
Helix 10	10	B	81	85	Right-handed 310
Helix 11	11	B	101	116	Right-handed alpha
Helix 12	12	B	124	129	Right-handed 310
Helix 13	13	C	14	24	Right-handed alpha
Helix 14	14	C	44	63	Right-handed alpha
Helix 15	15	C	65	80	Right-handed alpha
Helix 16	16	C	81	85	Right-handed 310
Helix 17	17	C	101	116	Right-handed alpha
Helix 18	18	C	124	129	Right-handed 310
Helix 19	19	D	14	24	Right-handed alpha
Helix 20	20	D	44	62	Right-handed alpha
Helix 21	21	D	65	80	Right-handed alpha
Helix 22	22	D	81	85	Right-handed 310
Helix 23	23	D	101	116	Right-handed alpha
Helix 24	24	D	124	129	Right-handed 310
Helix 25	25	E	293	295	Right-handed 310
Helix 26	26	E	321	325	Right-handed 310
Helix 27	27	F	293	295	Right-handed 310
Helix 28	28	F	321	325	Right-handed 310
Helix 29	29	G	293	295	Right-handed 310
Helix 30	30	G	321	325	Right-handed 310
Helix 31	31	H	293	295	Right-handed 310
Helix 32	32	H	321	325	Right-handed 310

There are 42 sheets in PDB entry 3QS9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	35	first strand
Strand 2	A	96	100	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	96	100	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	35	first strand
Strand 2	C	96	100	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	35	first strand
Strand 2	D	96	100	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	83	first strand
Strand 2	E	152	160	parallel
Strand 3	E	140	146	anti-parallel
Strand 4	E	102	107	anti-parallel
Strand 5	E	110	112	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	94	first strand
Strand 2	E	125	130	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	175	first strand
Strand 2	E	182	188	anti-parallel
Strand 3	E	220	221	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	216	first strand
Strand 2	E	193	199	anti-parallel
Strand 3	E	228	234	anti-parallel
Strand 4	E	239	243	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	248	first strand
Strand 2	E	268	276	parallel
Strand 3	E	308	317	anti-parallel
Strand 4	E	297	304	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	263	first strand
Strand 2	E	335	345	parallel
Strand 3	E	326	332	anti-parallel
Strand 4	E	283	286	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	351	first strand
Strand 2	E	369	376	anti-parallel
Strand 3	E	402	406	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	358	360	first strand
Strand 2	E	425	434	parallel
Strand 3	E	416	422	anti-parallel
Strand 4	E	380	385	anti-parallel
Strand 5	E	388	391	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	440	443	first strand
Strand 2	E	451	455	anti-parallel
Strand 3	E	496	500	anti-parallel
Strand 4	E	482	484	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	461	465	first strand
Strand 2	E	511	517	anti-parallel
Strand 3	E	522	528	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	175	first strand
Strand 2	F	182	188	anti-parallel
Strand 3	F	220	221	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	214	216	first strand
Strand 2	F	193	199	anti-parallel
Strand 3	F	228	234	anti-parallel
Strand 4	F	239	243	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	248	first strand
Strand 2	F	268	276	parallel
Strand 3	F	308	317	anti-parallel
Strand 4	F	297	304	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	263	first strand
Strand 2	F	335	345	parallel
Strand 3	F	326	332	anti-parallel
Strand 4	F	283	286	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	349	351	first strand
Strand 2	F	369	376	anti-parallel
Strand 3	F	402	406	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	358	360	first strand
Strand 2	F	425	434	parallel
Strand 3	F	416	422	anti-parallel
Strand 4	F	380	385	anti-parallel
Strand 5	F	388	391	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	440	443	first strand
Strand 2	F	451	455	anti-parallel
Strand 3	F	496	500	anti-parallel
Strand 4	F	482	484	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	461	465	first strand
Strand 2	F	511	517	anti-parallel
Strand 3	F	522	528	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	83	first strand
Strand 2	G	152	160	parallel
Strand 3	G	140	146	anti-parallel
Strand 4	G	102	107	anti-parallel
Strand 5	G	110	112	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	94	first strand
Strand 2	G	125	130	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	175	first strand
Strand 2	G	182	188	anti-parallel
Strand 3	G	220	221	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	214	216	first strand
Strand 2	G	193	199	anti-parallel
Strand 3	G	228	234	anti-parallel
Strand 4	G	239	243	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	245	248	first strand
Strand 2	G	268	276	parallel
Strand 3	G	308	317	anti-parallel
Strand 4	G	297	304	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	263	first strand
Strand 2	G	335	345	parallel
Strand 3	G	326	332	anti-parallel
Strand 4	G	283	286	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	349	351	first strand
Strand 2	G	369	376	anti-parallel
Strand 3	G	402	406	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	358	360	first strand
Strand 2	G	425	434	parallel
Strand 3	G	416	422	anti-parallel
Strand 4	G	380	385	anti-parallel
Strand 5	G	388	391	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	440	443	first strand
Strand 2	G	451	455	anti-parallel
Strand 3	G	496	500	anti-parallel
Strand 4	G	482	484	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	461	465	first strand
Strand 2	G	511	517	anti-parallel
Strand 3	G	522	528	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	83	first strand
Strand 2	H	152	160	parallel
Strand 3	H	140	146	anti-parallel
Strand 4	H	102	107	anti-parallel
Strand 5	H	110	112	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	89	94	first strand
Strand 2	H	125	130	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	168	175	first strand
Strand 2	H	182	188	anti-parallel
Strand 3	H	220	221	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	214	216	first strand
Strand 2	H	193	199	anti-parallel
Strand 3	H	228	234	anti-parallel
Strand 4	H	239	243	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	245	248	first strand
Strand 2	H	268	276	parallel
Strand 3	H	308	317	anti-parallel
Strand 4	H	297	304	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	259	263	first strand
Strand 2	H	335	345	parallel
Strand 3	H	326	332	anti-parallel
Strand 4	H	283	286	anti-parallel

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There are 3 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	349	351	first strand
Strand 2	H	369	376	anti-parallel
Strand 3	H	402	406	anti-parallel

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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	358	360	first strand
Strand 2	H	425	434	parallel
Strand 3	H	416	422	anti-parallel
Strand 4	H	380	385	anti-parallel
Strand 5	H	388	391	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	440	443	first strand
Strand 2	H	451	455	anti-parallel
Strand 3	H	496	500	anti-parallel
Strand 4	H	482	484	anti-parallel

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There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	461	465	first strand
Strand 2	H	511	517	anti-parallel
Strand 3	H	522	528	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3QS9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3QS9