Analysis of interatomic Contacts of Structural Units in PDB entry:
3QSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QSJ entry

There is 1 chain in PDB entry 3QSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0PRO 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3QSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 19Right-handed 310
Helix 2
2
A
47 56Right-handed alpha
Helix 3
3
A
68 85Right-handed alpha
Helix 4
4
A
103 111Right-handed alpha
Helix 5
5
A
115 123Right-handed alpha
Helix 6
6
A
130 133Right-handed 310
Helix 7
7
A
179 188Right-handed alpha
Helix 8
8
A
194 207Right-handed alpha
Helix 9
9
A
209 217Right-handed alpha
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There are 3 sheets in PDB entry 3QSJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
4 15anti-parallel
Strand 4
A
148 157parallel
Strand 5
A
134 140anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
4 15anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
171 178anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
127 128anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il