Analysis of interatomic Contacts of Structural Units in PDB entry:
3QT1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3QT1 entry

There is 1 chain in PDB entry 3QT1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	VAL 1305

There are123 helices in PDB entry 3QT1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	31	Right-handed alpha
Helix 2	2	A	95	104	Right-handed alpha
Helix 3	3	A	119	124	Right-handed alpha
Helix 4	4	A	130	143	Right-handed alpha
Helix 5	5	A	203	212	Right-handed alpha
Helix 6	6	A	215	222	Right-handed alpha
Helix 7	7	A	230	233	Right-handed 310
Helix 8	8	A	243	247	Right-handed 310
Helix 9	9	A	260	278	Right-handed alpha
Helix 10	10	A	285	303	Right-handed alpha
Helix 11	11	A	325	330	Right-handed alpha
Helix 12	12	A	334	339	Right-handed alpha
Helix 13	13	A	368	372	Right-handed alpha
Helix 14	14	A	384	395	Right-handed alpha
Helix 15	15	A	451	455	Right-handed 310
Helix 16	16	A	471	473	Right-handed 310
Helix 17	17	A	474	479	Right-handed alpha
Helix 18	18	A	494	505	Right-handed alpha
Helix 19	19	A	524	536	Right-handed alpha
Helix 20	20	A	543	553	Right-handed alpha
Helix 21	21	A	574	579	Right-handed alpha
Helix 22	22	A	628	636	Right-handed alpha
Helix 23	23	A	637	661	Right-handed alpha
Helix 24	24	A	665	670	Right-handed 310
Helix 25	25	A	672	696	Right-handed alpha
Helix 26	26	A	711	735	Right-handed alpha
Helix 27	27	A	741	750	Right-handed alpha
Helix 28	28	A	754	763	Right-handed alpha
Helix 29	29	A	793	798	Right-handed alpha
Helix 30	30	A	809	846	Right-handed alpha
Helix 31	31	A	867	871	Right-handed 310
Helix 32	32	A	874	876	Right-handed 310
Helix 33	33	A	889	898	Right-handed alpha
Helix 34	34	A	922	947	Right-handed alpha
Helix 35	35	A	959	971	Right-handed alpha
Helix 36	36	A	982	996	Right-handed alpha
Helix 37	37	A	1004	1026	Right-handed alpha
Helix 38	38	A	1027	1034	Right-handed alpha
Helix 39	39	A	1038	1057	Right-handed alpha
Helix 40	40	A	1063	1077	Right-handed alpha
Helix 41	41	A	1097	1106	Right-handed alpha
Helix 42	42	A	1127	1136	Right-handed alpha
Helix 43	43	A	1199	1203	Right-handed 310
Helix 44	44	A	1208	1221	Right-handed alpha
Helix 45	45	A	1261	1269	Right-handed alpha
Helix 46	46	A	1331	1339	Right-handed alpha
Helix 47	47	A	1340	1360	Right-handed alpha
Helix 48	48	A	1365	1377	Right-handed alpha
Helix 49	49	A	1388	1392	Right-handed 310
Helix 50	50	A	1395	1400	Right-handed alpha
Helix 51	51	A	1404	1415	Right-handed alpha
Helix 52	52	A	1423	1430	Right-handed alpha
Helix 53	53	B	26	28	Right-handed 310
Helix 54	54	B	29	42	Right-handed alpha
Helix 55	55	B	44	57	Right-handed alpha
Helix 56	56	B	57	62	Right-handed alpha
Helix 57	57	B	113	120	Right-handed alpha
Helix 58	58	B	185	193	Right-handed alpha
Helix 59	59	B	282	289	Right-handed alpha
Helix 60	60	B	296	302	Right-handed alpha
Helix 61	61	B	307	322	Right-handed alpha
Helix 62	62	B	328	333	Right-handed alpha
Helix 63	63	B	347	359	Right-handed alpha
Helix 64	64	B	370	390	Right-handed alpha
Helix 65	65	B	400	402	Right-handed 310
Helix 66	66	B	408	433	Right-handed alpha
Helix 67	67	B	450	463	Right-handed alpha
Helix 68	68	B	487	494	Right-handed alpha
Helix 69	69	B	551	560	Right-handed alpha
Helix 70	70	B	567	569	Right-handed 310
Helix 71	71	B	592	605	Right-handed alpha
Helix 72	72	B	619	621	Right-handed 310
Helix 73	73	B	654	666	Right-handed alpha
Helix 74	74	B	680	687	Right-handed alpha
Helix 75	75	B	696	701	Right-handed 310
Helix 76	76	B	744	749	Right-handed 310
Helix 77	77	B	750	756	Right-handed 310
Helix 78	78	B	763	775	Right-handed alpha
Helix 79	79	B	783	788	Right-handed 310
Helix 80	80	B	806	813	Right-handed alpha
Helix 81	81	B	843	848	Right-handed alpha
Helix 82	82	B	1014	1017	Right-handed 310
Helix 83	83	B	1023	1033	Right-handed alpha
Helix 84	84	B	1033	1039	Right-handed alpha
Helix 85	85	B	1051	1061	Right-handed alpha
Helix 86	86	B	1098	1103	Right-handed alpha
Helix 87	87	B	1132	1142	Right-handed alpha
Helix 88	88	B	1143	1151	Right-handed alpha
Helix 89	89	B	1197	1210	Right-handed alpha
Helix 90	90	C	26	40	Right-handed alpha
Helix 91	91	C	59	70	Right-handed alpha
Helix 92	92	C	76	80	Right-handed 310
Helix 93	93	C	167	171	Right-handed 310
Helix 94	94	C	196	201	Right-handed alpha
Helix 95	95	C	204	210	Right-handed 310
Helix 96	96	C	239	267	Right-handed alpha
Helix 97	97	D	53	73	Right-handed alpha
Helix 98	98	D	119	134	Right-handed alpha
Helix 99	99	D	138	152	Right-handed alpha
Helix 100	100	D	156	168	Right-handed alpha
Helix 101	101	D	173	181	Right-handed alpha
Helix 102	102	D	187	195	Right-handed alpha
Helix 103	103	D	203	215	Right-handed alpha
Helix 104	104	E	6	26	Right-handed alpha
Helix 105	105	E	32	37	Right-handed alpha
Helix 106	106	E	38	44	Right-handed alpha
Helix 107	107	E	67	72	Right-handed alpha
Helix 108	108	E	89	104	Right-handed alpha
Helix 109	109	E	120	124	Right-handed 310
Helix 110	110	E	136	140	Right-handed 310
Helix 111	111	E	157	167	Right-handed alpha
Helix 112	112	E	182	188	Right-handed alpha
Helix 113	113	F	86	102	Right-handed alpha
Helix 114	114	F	116	126	Right-handed alpha
Helix 115	115	G	21	35	Right-handed alpha
Helix 116	116	G	113	115	Right-handed 310
Helix 117	117	J	17	26	Right-handed alpha
Helix 118	118	J	31	39	Right-handed alpha
Helix 119	119	J	43	51	Right-handed alpha
Helix 120	120	J	55	62	Right-handed alpha
Helix 121	121	K	5	10	Right-handed 310
Helix 122	122	K	39	51	Right-handed alpha
Helix 123	123	K	82	111	Right-handed alpha

There are 50 sheets in PDB entry 3QT1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	B	1212	1217	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	91	first strand
Strand 2	A	235	241	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	112	113	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	161	163	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	180	184	anti-parallel
Strand 3	A	199	202	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	B	1128	1131	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1104	1106	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	486	490	anti-parallel
Strand 4	A	441	445	anti-parallel
Strand 5	A	457	463	anti-parallel
Strand 6	A	363	367	parallel
Strand 7	A	468	470	anti-parallel
Strand 8	A	348	355	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	431	434	anti-parallel
Strand 3	A	402	407	anti-parallel
Strand 4	A	411	414	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	571	573	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	589	first strand
Strand 2	A	606	608	anti-parallel
Strand 3	A	612	614	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	769	770	first strand
Strand 2	A	773	774	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	850	first strand
Strand 2	A	856	857	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	882	first strand
Strand 2	A	953	957	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1283	1287	first strand
Strand 2	A	1303	1307	anti-parallel
Strand 3	A	1116	1119	anti-parallel
Strand 4	A	1328	1329	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1141	1142	first strand
Strand 2	A	1272	1274	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1226	1228	first strand
Strand 2	A	1237	1240	anti-parallel
Strand 3	A	1191	1197	anti-parallel
Strand 4	A	1147	1154	anti-parallel
Strand 5	I	42	45	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	147	first strand
Strand 2	F	132	138	anti-parallel
Strand 3	A	1441	1445	anti-parallel
Strand 4	G	59	61	anti-parallel
Strand 5	G	68	71	anti-parallel
Strand 6	G	10	13	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	97	first strand
Strand 2	B	127	133	anti-parallel
Strand 3	B	165	169	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	109	111	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	209	210	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	498	499	parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	227	first strand
Strand 2	B	236	241	anti-parallel
Strand 3	B	253	256	anti-parallel
Strand 4	B	270	272	anti-parallel
Strand 5	B	280	281	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	690	694	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	740	741	anti-parallel
Strand 4	B	703	704	parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	565	first strand
Strand 2	B	585	590	anti-parallel
Strand 3	B	578	582	anti-parallel
Strand 4	B	623	627	parallel
Strand 5	B	614	618	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	796	first strand
Strand 2	B	853	862	anti-parallel
Strand 3	B	962	972	anti-parallel
Strand 4	B	947	956	anti-parallel
Strand 5	B	904	905	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	980	981	first strand
Strand 2	B	1080	1094	anti-parallel
Strand 3	B	820	827	anti-parallel
Strand 4	B	1010	1012	parallel
Strand 5	B	839	842	anti-parallel
Strand 6	B	990	994	parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	980	981	first strand
Strand 2	B	1080	1094	anti-parallel
Strand 3	B	1069	1073	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	910	912	first strand
Strand 2	B	939	940	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	916	first strand
Strand 2	B	935	936	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1163	first strand
Strand 2	B	1191	1195	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	13	first strand
Strand 2	C	17	22	anti-parallel
Strand 3	C	228	233	anti-parallel
Strand 4	C	176	180	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	152	162	anti-parallel
Strand 3	C	97	104	anti-parallel
Strand 4	C	118	120	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	152	162	anti-parallel
Strand 3	C	48	54	anti-parallel
Strand 4	L	65	68	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	129	132	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	143	147	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	G	2	8	anti-parallel
Strand 3	D	49	50	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	G	2	8	anti-parallel
Strand 3	G	74	79	anti-parallel
Strand 4	G	44	48	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	44	45	anti-parallel

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There are 4 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	78	81	anti-parallel
Strand 3	E	107	110	parallel
Strand 4	E	131	133	parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	115	116	parallel

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There are 3 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	212	214	parallel
Strand 3	E	195	196	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	202	first strand
Strand 2	E	206	209	anti-parallel

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There are 7 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	142	153	anti-parallel
Strand 3	G	156	162	anti-parallel
Strand 4	G	106	111	parallel
Strand 5	G	98	103	anti-parallel
Strand 6	G	85	94	anti-parallel
Strand 7	G	142	153	anti-parallel

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There are 3 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	122	first strand
Strand 2	G	129	131	anti-parallel
Strand 3	G	136	138	anti-parallel

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There are 9 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	98	first strand
Strand 2	H	141	145	anti-parallel
Strand 3	H	54	58	anti-parallel
Strand 4	H	7	16	anti-parallel
Strand 5	H	23	30	anti-parallel
Strand 6	H	38	43	anti-parallel
Strand 7	H	121	127	anti-parallel
Strand 8	H	112	118	anti-parallel
Strand 9	H	100	101	anti-parallel

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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3QT1

Analysis of interatomic Contacts of Structural Units in PDB entry:
3QT1