Analysis of interatomic Contacts of Structural Units in PDB entry:
3QTB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QTB entry

There are 2 chains in PDB entry 3QTB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 134
B
 ILE 2LYS 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3QTB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 32Right-handed alpha
Helix 2
2
A
43 47Right-handed 310
Helix 3
3
A
48 69Right-handed alpha
Helix 4
4
A
83 95Right-handed alpha
Helix 5
5
A
116 126Right-handed alpha
Helix 6
6
B
14 32Right-handed alpha
Helix 7
7
B
43 47Right-handed 310
Helix 8
8
B
48 69Right-handed alpha
Helix 9
9
B
83 96Right-handed alpha
Helix 10
10
B
116 126Right-handed alpha
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There are 2 sheets in PDB entry 3QTB. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 79first strand
Strand 2
A
35 41parallel
Strand 3
A
6 9parallel
Strand 4
A
99 103parallel
Strand 5
A
130 133parallel
Strand 6
B
130 133anti-parallel
Strand 7
B
99 103parallel
Strand 8
B
6 9parallel
Strand 9
B
35 41parallel
Strand 10
B
73 79parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 107first strand
Strand 2
B
113 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il