Analysis of interatomic Contacts of Structural Units in PDB entry:
3QUJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QUJ entry

There are 4 chains in PDB entry 3QUJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5GLN 312
B
 LYS 5GLN 312
C
 LYS 5MSE 304
D
 LYS 5GLN 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 3QUJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 36Right-handed alpha
Helix 2
2
A
46 56Right-handed alpha
Helix 3
3
A
65 76Right-handed alpha
Helix 4
4
A
107 115Right-handed alpha
Helix 5
5
A
131 138Right-handed alpha
Helix 6
6
A
145 149Right-handed 310
Helix 7
7
A
156 166Right-handed alpha
Helix 8
8
A
176 186Right-handed alpha
Helix 9
9
A
186 191Right-handed alpha
Helix 10
10
A
214 228Right-handed alpha
Helix 11
11
A
231 242Right-handed alpha
Helix 12
12
A
250 253Right-handed 310
Helix 13
13
A
254 272Right-handed alpha
Helix 14
14
A
281 304Right-handed alpha
Helix 15
15
B
16 36Right-handed alpha
Helix 16
16
B
46 56Right-handed alpha
Helix 17
17
B
65 76Right-handed alpha
Helix 18
18
B
107 115Right-handed alpha
Helix 19
19
B
131 138Right-handed alpha
Helix 20
20
B
145 149Right-handed 310
Helix 21
21
B
156 166Right-handed alpha
Helix 22
22
B
176 186Right-handed alpha
Helix 23
23
B
186 191Right-handed alpha
Helix 24
24
B
214 228Right-handed alpha
Helix 25
25
B
231 241Right-handed alpha
Helix 26
26
B
250 253Right-handed 310
Helix 27
27
B
254 271Right-handed alpha
Helix 28
28
B
277 304Right-handed alpha
Helix 29
29
C
16 36Right-handed alpha
Helix 30
30
C
46 55Right-handed alpha
Helix 31
31
C
65 76Right-handed alpha
Helix 32
32
C
107 114Right-handed alpha
Helix 33
33
C
115 117Right-handed 310
Helix 34
34
C
131 138Right-handed alpha
Helix 35
35
C
145 149Right-handed 310
Helix 36
36
C
156 166Right-handed alpha
Helix 37
37
C
176 186Right-handed alpha
Helix 38
38
C
186 192Right-handed alpha
Helix 39
39
C
214 228Right-handed alpha
Helix 40
40
C
231 241Right-handed alpha
Helix 41
41
C
250 253Right-handed 310
Helix 42
42
C
254 267Right-handed alpha
Helix 43
43
C
284 303Right-handed alpha
Helix 44
44
D
16 36Right-handed alpha
Helix 45
45
D
46 56Right-handed alpha
Helix 46
46
D
65 76Right-handed alpha
Helix 47
47
D
107 114Right-handed alpha
Helix 48
48
D
115 117Right-handed 310
Helix 49
49
D
131 138Right-handed alpha
Helix 50
50
D
139 143Right-handed 310
Helix 51
51
D
145 149Right-handed 310
Helix 52
52
D
156 166Right-handed alpha
Helix 53
53
D
176 186Right-handed alpha
Helix 54
54
D
186 191Right-handed alpha
Helix 55
55
D
214 228Right-handed alpha
Helix 56
56
D
231 242Right-handed alpha
Helix 57
57
D
250 253Right-handed 310
Helix 58
58
D
254 265Right-handed alpha
Helix 59
59
D
288 304Right-handed alpha
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There are 8 sheets in PDB entry 3QUJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
6 11parallel
Strand 3
A
61 63parallel
Strand 4
A
206 210anti-parallel
Strand 5
A
78 86anti-parallel
Strand 6
A
243 248anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
119 123parallel
Strand 3
A
171 175parallel
Strand 4
A
93 100anti-parallel
Strand 5
A
193 202anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
7 11parallel
Strand 3
B
61 63parallel
Strand 4
B
206 210anti-parallel
Strand 5
B
78 86anti-parallel
Strand 6
B
243 248anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 154first strand
Strand 2
B
119 122parallel
Strand 3
B
171 175parallel
Strand 4
B
92 100anti-parallel
Strand 5
B
193 203anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 42first strand
Strand 2
C
7 11parallel
Strand 3
C
61 63parallel
Strand 4
C
206 210anti-parallel
Strand 5
C
78 83anti-parallel
Strand 6
C
247 248anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 154first strand
Strand 2
C
119 122parallel
Strand 3
C
171 175parallel
Strand 4
C
93 100anti-parallel
Strand 5
C
193 202anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 42first strand
Strand 2
D
7 11parallel
Strand 3
D
61 63parallel
Strand 4
D
206 210anti-parallel
Strand 5
D
78 86anti-parallel
Strand 6
D
243 248anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 154first strand
Strand 2
D
119 122parallel
Strand 3
D
171 175parallel
Strand 4
D
93 100anti-parallel
Strand 5
D
193 202anti-parallel
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