Analysis of interatomic Contacts of Structural Units in PDB entry:
3QV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QV1 entry

There are 9 chains in PDB entry 3QV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1LYS 333
B
 LYS 0LYS 333
C
 LYS 0LYS 333
D
 ALA -1LYS 333
E
 LYS 0LYS 333
F
 LYS 0LYS 333
G
 ASP 58ASN 78
H
 ASP 58ASP 77
I
 ASP 58TYR 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 3QV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 19Right-handed alpha
Helix 2
2
A
36 46Right-handed alpha
Helix 3
3
A
78 82Right-handed 310
Helix 4
4
A
83 88Right-handed alpha
Helix 5
5
A
101 111Right-handed alpha
Helix 6
6
A
133 137Right-handed 310
Helix 7
7
A
148 166Right-handed alpha
Helix 8
8
A
198 202Right-handed 310
Helix 9
9
A
209 218Right-handed alpha
Helix 10
10
A
219 222Right-handed 310
Helix 11
11
A
251 265Right-handed alpha
Helix 12
12
A
279 284Right-handed 310
Helix 13
13
A
295 297Right-handed 310
Helix 14
14
A
314 331Right-handed alpha
Helix 15
15
B
9 19Right-handed alpha
Helix 16
16
B
36 46Right-handed alpha
Helix 17
17
B
78 82Right-handed 310
Helix 18
18
B
83 88Right-handed alpha
Helix 19
19
B
101 111Right-handed alpha
Helix 20
20
B
133 137Right-handed 310
Helix 21
21
B
148 165Right-handed alpha
Helix 22
22
B
198 202Right-handed 310
Helix 23
23
B
209 218Right-handed alpha
Helix 24
24
B
219 222Right-handed 310
Helix 25
25
B
251 265Right-handed alpha
Helix 26
26
B
279 284Right-handed 310
Helix 27
27
B
314 331Right-handed alpha
Helix 28
28
C
9 19Right-handed alpha
Helix 29
29
C
36 46Right-handed alpha
Helix 30
30
C
78 82Right-handed 310
Helix 31
31
C
83 88Right-handed alpha
Helix 32
32
C
101 106Right-handed alpha
Helix 33
33
C
106 112Right-handed alpha
Helix 34
34
C
148 166Right-handed alpha
Helix 35
35
C
198 202Right-handed 310
Helix 36
36
C
209 218Right-handed alpha
Helix 37
37
C
219 222Right-handed 310
Helix 38
38
C
251 264Right-handed alpha
Helix 39
39
C
279 284Right-handed 310
Helix 40
40
C
295 297Right-handed 310
Helix 41
41
C
314 331Right-handed alpha
Helix 42
42
D
9 20Right-handed alpha
Helix 43
43
D
34 45Right-handed alpha
Helix 44
44
D
78 82Right-handed 310
Helix 45
45
D
83 88Right-handed alpha
Helix 46
46
D
101 106Right-handed alpha
Helix 47
47
D
106 111Right-handed alpha
Helix 48
48
D
133 137Right-handed 310
Helix 49
49
D
148 166Right-handed alpha
Helix 50
50
D
209 218Right-handed alpha
Helix 51
51
D
219 222Right-handed 310
Helix 52
52
D
251 265Right-handed alpha
Helix 53
53
D
279 284Right-handed 310
Helix 54
54
D
295 297Right-handed 310
Helix 55
55
D
314 331Right-handed alpha
Helix 56
56
E
9 20Right-handed alpha
Helix 57
57
E
34 46Right-handed alpha
Helix 58
58
E
78 82Right-handed 310
Helix 59
59
E
83 88Right-handed alpha
Helix 60
60
E
101 112Right-handed alpha
Helix 61
61
E
133 137Right-handed 310
Helix 62
62
E
148 165Right-handed alpha
Helix 63
63
E
198 202Right-handed 310
Helix 64
64
E
209 218Right-handed alpha
Helix 65
65
E
219 222Right-handed 310
Helix 66
66
E
251 265Right-handed alpha
Helix 67
67
E
279 284Right-handed 310
Helix 68
68
E
295 297Right-handed 310
Helix 69
69
E
314 331Right-handed alpha
Helix 70
70
F
9 19Right-handed alpha
Helix 71
71
F
36 46Right-handed alpha
Helix 72
72
F
78 82Right-handed 310
Helix 73
73
F
83 88Right-handed alpha
Helix 74
74
F
101 111Right-handed alpha
Helix 75
75
F
133 137Right-handed 310
Helix 76
76
F
148 166Right-handed alpha
Helix 77
77
F
198 202Right-handed 310
Helix 78
78
F
209 218Right-handed alpha
Helix 79
79
F
219 222Right-handed 310
Helix 80
80
F
251 265Right-handed alpha
Helix 81
81
F
279 284Right-handed 310
Helix 82
82
F
295 297Right-handed 310
Helix 83
83
F
314 331Right-handed alpha
Helix 84
84
G
58 67Right-handed alpha
Helix 85
85
H
58 67Right-handed alpha
Helix 86
86
I
58 67Right-handed alpha
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There are 19 sheets in PDB entry 3QV1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
69 74anti-parallel
Strand 4
A
25 31parallel
Strand 5
A
1 6parallel
Strand 6
A
91 94parallel
Strand 7
A
115 118parallel
Strand 8
A
143 145parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
225 232anti-parallel
Strand 3
A
167 177parallel
Strand 4
A
238 246anti-parallel
Strand 5
A
304 311anti-parallel
Strand 6
A
290 293anti-parallel
Strand 7
A
271 274parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
225 232anti-parallel
Strand 3
A
167 177parallel
Strand 4
A
238 246anti-parallel
Strand 5
A
304 311anti-parallel
Strand 6
A
298 300anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
63 66anti-parallel
Strand 3
B
69 74anti-parallel
Strand 4
B
25 31parallel
Strand 5
B
1 6parallel
Strand 6
B
91 94parallel
Strand 7
B
115 118parallel
Strand 8
B
143 145parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 206first strand
Strand 2
B
225 232anti-parallel
Strand 3
B
167 177parallel
Strand 4
B
238 246anti-parallel
Strand 5
B
304 311anti-parallel
Strand 6
B
290 293anti-parallel
Strand 7
B
271 274parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 206first strand
Strand 2
B
225 232anti-parallel
Strand 3
B
167 177parallel
Strand 4
B
238 246anti-parallel
Strand 5
B
304 311anti-parallel
Strand 6
B
298 300anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
63 66anti-parallel
Strand 3
C
69 74anti-parallel
Strand 4
C
25 31parallel
Strand 5
C
1 6parallel
Strand 6
C
91 94parallel
Strand 7
C
115 118parallel
Strand 8
C
143 145parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 206first strand
Strand 2
C
225 232anti-parallel
Strand 3
C
167 177parallel
Strand 4
C
238 246anti-parallel
Strand 5
C
304 311anti-parallel
Strand 6
C
290 293anti-parallel
Strand 7
C
271 274parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 206first strand
Strand 2
C
225 232anti-parallel
Strand 3
C
167 177parallel
Strand 4
C
238 246anti-parallel
Strand 5
C
304 311anti-parallel
Strand 6
C
298 300anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
63 66anti-parallel
Strand 3
D
69 74anti-parallel
Strand 4
D
25 31parallel
Strand 5
D
1 6parallel
Strand 6
D
91 94parallel
Strand 7
D
115 118parallel
Strand 8
D
143 145parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 47first strand
Strand 2
D
51 52anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 206first strand
Strand 2
D
225 232anti-parallel
Strand 3
D
167 177parallel
Strand 4
D
238 246anti-parallel
Strand 5
D
304 311anti-parallel
Strand 6
D
290 293anti-parallel
Strand 7
D
271 274parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 206first strand
Strand 2
D
225 232anti-parallel
Strand 3
D
167 177parallel
Strand 4
D
238 246anti-parallel
Strand 5
D
304 311anti-parallel
Strand 6
D
298 300anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
63 66anti-parallel
Strand 3
E
69 74anti-parallel
Strand 4
E
25 31parallel
Strand 5
E
1 6parallel
Strand 6
E
91 94parallel
Strand 7
E
115 118parallel
Strand 8
E
143 145parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
204 206first strand
Strand 2
E
225 232anti-parallel
Strand 3
E
167 177parallel
Strand 4
E
238 246anti-parallel
Strand 5
E
304 311anti-parallel
Strand 6
E
290 293anti-parallel
Strand 7
E
271 274parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
204 206first strand
Strand 2
E
225 232anti-parallel
Strand 3
E
167 177parallel
Strand 4
E
238 246anti-parallel
Strand 5
E
304 311anti-parallel
Strand 6
E
298 300anti-parallel
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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
57 59first strand
Strand 2
F
63 66anti-parallel
Strand 3
F
69 74anti-parallel
Strand 4
F
25 31parallel
Strand 5
F
1 6parallel
Strand 6
F
91 94parallel
Strand 7
F
115 118parallel
Strand 8
F
143 145parallel
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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
204 206first strand
Strand 2
F
228 232anti-parallel
Strand 3
F
167 177parallel
Strand 4
F
238 246anti-parallel
Strand 5
F
304 311anti-parallel
Strand 6
F
290 293anti-parallel
Strand 7
F
271 274parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
204 206first strand
Strand 2
F
228 232anti-parallel
Strand 3
F
167 177parallel
Strand 4
F
238 246anti-parallel
Strand 5
F
304 311anti-parallel
Strand 6
F
298 300anti-parallel
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