Analysis of interatomic Contacts of Structural Units in PDB entry:
3QV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QV9 entry

There are 2 chains in PDB entry 3QV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 499
B
 MET 1SER 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3QV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 9Right-handed alpha
Helix 2
2
A
34 45Right-handed alpha
Helix 3
3
A
57 76Right-handed alpha
Helix 4
4
A
95 97Right-handed 310
Helix 5
5
A
113 117Right-handed 310
Helix 6
6
A
131 136Right-handed alpha
Helix 7
7
A
191 205Right-handed alpha
Helix 8
8
A
216 228Right-handed alpha
Helix 9
9
A
242 248Right-handed alpha
Helix 10
10
A
248 256Right-handed alpha
Helix 11
11
A
263 270Right-handed alpha
Helix 12
12
A
271 290Right-handed alpha
Helix 13
13
A
300 305Right-handed 310
Helix 14
14
A
310 324Right-handed alpha
Helix 15
15
A
331 336Right-handed alpha
Helix 16
16
A
339 358Right-handed alpha
Helix 17
17
A
359 369Right-handed alpha
Helix 18
18
A
376 393Right-handed alpha
Helix 19
19
A
404 413Right-handed alpha
Helix 20
20
A
425 432Right-handed alpha
Helix 21
21
A
433 435Right-handed 310
Helix 22
22
A
444 449Right-handed alpha
Helix 23
23
A
454 468Right-handed alpha
Helix 24
24
B
2 9Right-handed alpha
Helix 25
25
B
34 45Right-handed alpha
Helix 26
26
B
57 76Right-handed alpha
Helix 27
27
B
191 205Right-handed alpha
Helix 28
28
B
216 228Right-handed alpha
Helix 29
29
B
242 248Right-handed alpha
Helix 30
30
B
248 256Right-handed alpha
Helix 31
31
B
263 270Right-handed alpha
Helix 32
32
B
271 290Right-handed alpha
Helix 33
33
B
300 305Right-handed 310
Helix 34
34
B
310 324Right-handed alpha
Helix 35
35
B
331 336Right-handed alpha
Helix 36
36
B
339 357Right-handed alpha
Helix 37
37
B
359 369Right-handed alpha
Helix 38
38
B
376 393Right-handed alpha
Helix 39
39
B
404 413Right-handed alpha
Helix 40
40
B
425 432Right-handed alpha
Helix 41
41
B
433 435Right-handed 310
Helix 42
42
B
444 449Right-handed alpha
Helix 43
43
B
454 468Right-handed alpha
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There are 6 sheets in PDB entry 3QV9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
46 52parallel
Strand 3
A
80 84parallel
Strand 4
A
208 211parallel
Strand 5
A
235 240parallel
Strand 6
A
258 262parallel
Strand 7
A
293 296parallel
Strand 8
A
327 330parallel
Strand 9
A
23 27parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
170 173anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
107 111parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
149 158anti-parallel
Strand 5
A
141 144anti-parallel
Strand 6
A
178 179anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 442first strand
Strand 2
A
419 423parallel
Strand 3
A
396 400parallel
Strand 4
A
476 481parallel
Strand 5
A
492 497anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 27first strand
Strand 2
B
46 52parallel
Strand 3
B
80 84parallel
Strand 4
B
208 211parallel
Strand 5
B
235 240parallel
Strand 6
B
258 262parallel
Strand 7
B
293 296parallel
Strand 8
B
327 330parallel
Strand 9
B
23 27parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 442first strand
Strand 2
B
419 423parallel
Strand 3
B
396 400parallel
Strand 4
B
476 480parallel
Strand 5
B
493 497anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il