Analysis of interatomic Contacts of Structural Units in PDB entry:
3QVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QVE entry

There are 3 chains in PDB entry 3QVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ALA 342
B
 SER -1ALA 342
C
 MET 0ALA 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3QVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
234 241Right-handed alpha
Helix 2
2
A
286 290Right-handed 310
Helix 3
3
A
313 322Right-handed alpha
Helix 4
4
B
234 241Right-handed alpha
Helix 5
5
B
286 290Right-handed 310
Helix 6
6
B
313 322Right-handed alpha
Helix 7
7
C
234 241Right-handed alpha
Helix 8
8
C
313 322Right-handed alpha
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There are 6 sheets in PDB entry 3QVE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
220 223anti-parallel
Strand 3
A
292 297anti-parallel
Strand 4
A
275 283anti-parallel
Strand 5
A
262 272anti-parallel
Strand 6
A
333 334anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
308 311anti-parallel
Strand 3
A
326 327parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
220 223anti-parallel
Strand 3
B
292 296anti-parallel
Strand 4
B
275 283anti-parallel
Strand 5
B
262 272anti-parallel
Strand 6
B
333 334anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 304first strand
Strand 2
B
308 311anti-parallel
Strand 3
B
326 327parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
232 233first strand
Strand 2
C
220 223anti-parallel
Strand 3
C
292 296anti-parallel
Strand 4
C
275 283anti-parallel
Strand 5
C
262 272anti-parallel
Strand 6
C
333 334anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
302 304first strand
Strand 2
C
308 311anti-parallel
Strand 3
C
326 327parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il