Analysis of interatomic Contacts of Structural Units in PDB entry:
3QVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QVG entry

There are 4 chains in PDB entry 3QVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 841SER 922
B
 GLU 528ALA 631
C
 VAL 846SER 922
D
 GLU 528ALA 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3QVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
864 875Right-handed alpha
Helix 2
2
A
881 888Right-handed 310
Helix 3
3
A
905 916Right-handed alpha
Helix 4
4
B
555 567Right-handed alpha
Helix 5
5
B
589 597Right-handed alpha
Helix 6
6
B
606 617Right-handed alpha
Helix 7
7
B
621 626Right-handed 310
Helix 8
8
C
864 875Right-handed alpha
Helix 9
9
C
881 888Right-handed 310
Helix 10
10
C
905 916Right-handed alpha
Helix 11
11
D
555 567Right-handed alpha
Helix 12
12
D
589 599Right-handed alpha
Helix 13
13
D
606 616Right-handed alpha
Helix 14
14
D
621 626Right-handed 310
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There are 4 sheets in PDB entry 3QVG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
878 879first strand
Strand 2
A
855 857parallel
Strand 3
A
890 892parallel
Strand 4
A
902 904parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 571first strand
Strand 2
B
545 549parallel
Strand 3
B
581 584parallel
Strand 4
B
603 605parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
878 879first strand
Strand 2
C
855 857parallel
Strand 3
C
890 892parallel
Strand 4
C
902 904parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
570 571first strand
Strand 2
D
545 549parallel
Strand 3
D
581 584parallel
Strand 4
D
603 605parallel
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