Analysis of interatomic Contacts of Structural Units in PDB entry:
3QVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QVM entry

There are 2 chains in PDB entry 3QVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5ASN 277
B
 GLY 0THR 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3QVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 18Right-handed alpha
Helix 2
2
A
39 44Right-handed 310
Helix 3
3
A
46 52Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
75 78Right-handed 310
Helix 6
6
A
79 94Right-handed alpha
Helix 7
7
A
105 119Right-handed alpha
Helix 8
8
A
146 160Right-handed alpha
Helix 9
9
A
160 174Right-handed alpha
Helix 10
10
A
178 192Right-handed alpha
Helix 11
11
A
193 206Right-handed alpha
Helix 12
12
A
209 216Right-handed 310
Helix 13
13
A
232 243Right-handed alpha
Helix 14
14
A
257 262Right-handed alpha
Helix 15
15
A
262 277Right-handed alpha
Helix 16
16
B
10 18Right-handed alpha
Helix 17
17
B
39 44Right-handed 310
Helix 18
18
B
46 52Right-handed alpha
Helix 19
19
B
68 72Right-handed 310
Helix 20
20
B
75 78Right-handed 310
Helix 21
21
B
79 94Right-handed alpha
Helix 22
22
B
105 119Right-handed alpha
Helix 23
23
B
146 160Right-handed alpha
Helix 24
24
B
160 174Right-handed alpha
Helix 25
25
B
178 191Right-handed alpha
Helix 26
26
B
193 206Right-handed alpha
Helix 27
27
B
209 216Right-handed 310
Helix 28
28
B
232 243Right-handed alpha
Helix 29
29
B
257 262Right-handed alpha
Helix 30
30
B
262 277Right-handed alpha
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There are 4 sheets in PDB entry 3QVM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
55 58anti-parallel
Strand 3
A
29 33parallel
Strand 4
A
99 104parallel
Strand 5
A
122 128parallel
Strand 6
A
220 227parallel
Strand 7
A
246 254parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
141 142anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
55 58anti-parallel
Strand 3
B
29 33parallel
Strand 4
B
99 104parallel
Strand 5
B
122 128parallel
Strand 6
B
220 227parallel
Strand 7
B
246 254parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
141 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il