Analysis of interatomic Contacts of Structural Units in PDB entry:
3QVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QVW entry

There is 1 chain in PDB entry 3QVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3QVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
33 41Right-handed 310
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
63 76Right-handed alpha
Helix 5
5
A
79 92Right-handed alpha
Helix 6
6
A
104 111Right-handed 310
Helix 7
7
A
116 120Right-handed 310
Helix 8
8
A
122 138Right-handed alpha
Helix 9
9
A
157 162Right-handed alpha
Helix 10
10
A
163 174Right-handed alpha
Helix 11
11
A
175 179Right-handed 310
Helix 12
12
A
180 192Right-handed alpha
Helix 13
13
A
207 217Right-handed alpha
Helix 14
14
A
229 238Right-handed alpha
Helix 15
15
A
238 244Right-handed alpha
Helix 16
16
A
258 265Right-handed alpha
Helix 17
17
A
267 277Right-handed alpha
Helix 18
18
A
280 287Right-handed alpha
Helix 19
19
A
317 319Right-handed 310
Helix 20
20
A
331 353Right-handed alpha
Helix 21
21
A
360 366Right-handed 310
Helix 22
22
A
376 392Right-handed alpha
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There are 2 sheets in PDB entry 3QVW. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
52 57parallel
Strand 3
A
2 6parallel
Strand 4
A
142 146parallel
Strand 5
A
196 198parallel
Strand 6
A
220 222parallel
Strand 7
A
357 358parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 298first strand
Strand 2
A
247 257parallel
Strand 3
A
307 315anti-parallel
Strand 4
A
321 329anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il