Analysis of interatomic Contacts of Structural Units in PDB entry:
3QYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QYQ entry

There are 4 chains in PDB entry 3QYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -5GLY 279
B
 LEU -4SER 277
C
 TYR -3VAL 280
D
 TYR -3VAL 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 3QYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 18Right-handed alpha
Helix 2
2
A
29 42Right-handed alpha
Helix 3
3
A
52 54Right-handed 310
Helix 4
4
A
55 62Right-handed alpha
Helix 5
5
A
62 67Right-handed alpha
Helix 6
6
A
68 73Right-handed 310
Helix 7
7
A
87 101Right-handed alpha
Helix 8
8
A
111 118Right-handed alpha
Helix 9
9
A
118 138Right-handed alpha
Helix 10
10
A
153 168Right-handed alpha
Helix 11
11
A
183 210Right-handed alpha
Helix 12
12
A
231 247Right-handed alpha
Helix 13
13
A
248 251Right-handed 310
Helix 14
14
A
261 274Right-handed alpha
Helix 15
15
B
-1 18Right-handed alpha
Helix 16
16
B
29 42Right-handed alpha
Helix 17
17
B
52 54Right-handed 310
Helix 18
18
B
55 62Right-handed alpha
Helix 19
19
B
62 67Right-handed alpha
Helix 20
20
B
68 73Right-handed 310
Helix 21
21
B
87 101Right-handed alpha
Helix 22
22
B
111 118Right-handed alpha
Helix 23
23
B
118 138Right-handed alpha
Helix 24
24
B
153 168Right-handed alpha
Helix 25
25
B
183 202Right-handed alpha
Helix 26
26
B
202 207Right-handed alpha
Helix 27
27
B
231 247Right-handed alpha
Helix 28
28
B
248 251Right-handed 310
Helix 29
29
B
261 274Right-handed alpha
Helix 30
30
C
0 18Right-handed alpha
Helix 31
31
C
29 42Right-handed alpha
Helix 32
32
C
55 62Right-handed alpha
Helix 33
33
C
62 67Right-handed alpha
Helix 34
34
C
68 73Right-handed 310
Helix 35
35
C
87 101Right-handed alpha
Helix 36
36
C
111 118Right-handed alpha
Helix 37
37
C
118 138Right-handed alpha
Helix 38
38
C
153 168Right-handed alpha
Helix 39
39
C
184 210Right-handed alpha
Helix 40
40
C
231 247Right-handed alpha
Helix 41
41
C
248 251Right-handed 310
Helix 42
42
C
261 274Right-handed alpha
Helix 43
43
D
0 18Right-handed alpha
Helix 44
44
D
29 42Right-handed alpha
Helix 45
45
D
55 62Right-handed alpha
Helix 46
46
D
62 67Right-handed alpha
Helix 47
47
D
68 73Right-handed 310
Helix 48
48
D
87 101Right-handed alpha
Helix 49
49
D
111 118Right-handed alpha
Helix 50
50
D
118 138Right-handed alpha
Helix 51
51
D
147 151Right-handed 310
Helix 52
52
D
153 168Right-handed alpha
Helix 53
53
D
184 209Right-handed alpha
Helix 54
54
D
231 247Right-handed alpha
Helix 55
55
D
248 251Right-handed 310
Helix 56
56
D
261 274Right-handed alpha
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There are 4 sheets in PDB entry 3QYQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
48 51parallel
Strand 3
A
74 79parallel
Strand 4
A
105 109parallel
Strand 5
A
141 145parallel
Strand 6
A
171 173parallel
Strand 7
A
222 228parallel
Strand 8
A
256 260parallel
Strand 9
A
19 22parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
48 51parallel
Strand 3
B
74 79parallel
Strand 4
B
105 109parallel
Strand 5
B
141 145parallel
Strand 6
B
171 173parallel
Strand 7
B
222 226parallel
Strand 8
B
256 260parallel
Strand 9
B
19 22parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 23first strand
Strand 2
C
48 51parallel
Strand 3
C
74 79parallel
Strand 4
C
105 109parallel
Strand 5
C
141 145parallel
Strand 6
C
171 173parallel
Strand 7
C
222 228parallel
Strand 8
C
256 260parallel
Strand 9
C
19 23parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 23first strand
Strand 2
D
48 51parallel
Strand 3
D
74 79parallel
Strand 4
D
105 109parallel
Strand 5
D
141 145parallel
Strand 6
D
171 173parallel
Strand 7
D
222 228parallel
Strand 8
D
256 260parallel
Strand 9
D
19 23parallel
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