Analysis of interatomic Contacts of Structural Units in PDB entry:
3QYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QYT entry

There is 1 chain in PDB entry 3QYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1PRO 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3QYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 30Right-handed alpha
Helix 2
2
A
44 54Right-handed alpha
Helix 3
3
A
63 72Right-handed alpha
Helix 4
4
A
108 112Right-handed 310
Helix 5
5
A
128 136Right-handed alpha
Helix 6
6
A
137 139Right-handed 310
Helix 7
7
A
145 154Right-handed alpha
Helix 8
8
A
167 172Right-handed 310
Helix 9
9
A
186 198Right-handed alpha
Helix 10
10
A
216 221Right-handed alpha
Helix 11
11
A
237 241Right-handed 310
Helix 12
12
A
260 275Right-handed alpha
Helix 13
13
A
310 316Right-handed alpha
Helix 14
14
A
316 328Right-handed alpha
Helix 15
15
A
348 362Right-handed alpha
Helix 16
16
A
373 384Right-handed alpha
Helix 17
17
A
392 402Right-handed alpha
Helix 18
18
A
460 472Right-handed alpha
Helix 19
19
A
475 480Right-handed alpha
Helix 20
20
A
492 496Right-handed 310
Helix 21
21
A
515 527Right-handed alpha
Helix 22
22
A
536 541Right-handed alpha
Helix 23
23
A
548 552Right-handed 310
Helix 24
24
A
555 557Right-handed 310
Helix 25
25
A
572 577Right-handed 310
Helix 26
26
A
590 592Right-handed 310
Helix 27
27
A
593 609Right-handed alpha
Helix 28
28
A
646 652Right-handed alpha
Helix 29
29
A
652 662Right-handed alpha
Helix 30
30
A
663 666Right-handed 310
Helix 31
31
A
668 678Right-handed alpha
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There are 8 sheets in PDB entry 3QYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
37 41parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
301 304anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
117 118parallel
Strand 3
A
202 206parallel
Strand 4
A
94 102anti-parallel
Strand 5
A
223 227anti-parallel
Strand 6
A
231 234anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
117 118parallel
Strand 3
A
202 206parallel
Strand 4
A
94 102anti-parallel
Strand 5
A
244 247anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 347first strand
Strand 2
A
366 371parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 391first strand
Strand 2
A
586 589anti-parallel
Strand 3
A
405 411anti-parallel
Strand 4
A
637 640anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
448 451parallel
Strand 3
A
530 534parallel
Strand 4
A
426 433anti-parallel
Strand 5
A
559 562anti-parallel
Strand 6
A
568 570anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
448 451parallel
Strand 3
A
530 534parallel
Strand 4
A
426 433anti-parallel
Strand 5
A
580 582anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il