Analysis of interatomic Contacts of Structural Units in PDB entry:
3QYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3QYY entry

There are 2 chains in PDB entry 3QYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 134ASP 290
B
 ASP 130ASP 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3QYY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
145 164Right-handed alpha
Helix 2
2
A
176 185Right-handed alpha
Helix 3
3
A
185 201Right-handed alpha
Helix 4
4
A
225 241Right-handed alpha
Helix 5
5
A
264 282Right-handed alpha
Helix 6
6
B
130 137Right-handed alpha
Helix 7
7
B
145 163Right-handed alpha
Helix 8
8
B
176 185Right-handed alpha
Helix 9
9
B
185 202Right-handed alpha
Helix 10
10
B
225 241Right-handed alpha
Helix 11
11
B
264 282Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3QYY. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 214first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
252 258anti-parallel
Strand 5
A
286 289parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 214first strand
Strand 2
B
217 222anti-parallel
Strand 3
B
168 174anti-parallel
Strand 4
B
252 258anti-parallel
Strand 5
B
286 289parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il