Analysis of interatomic Contacts of Structural Units in PDB entry:
3R07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R07 entry

There are 2 chains in PDB entry 3R07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 262
C
 MET 1ILE 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3R07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
52 57Right-handed alpha
Helix 3
3
A
58 65Right-handed alpha
Helix 4
4
A
98 117Right-handed alpha
Helix 5
5
A
171 176Right-handed alpha
Helix 6
6
A
181 183Right-handed 310
Helix 7
7
A
184 194Right-handed alpha
Helix 8
8
A
198 202Right-handed 310
Helix 9
9
A
206 223Right-handed alpha
Helix 10
10
A
232 246Right-handed alpha
Helix 11
11
A
249 254Right-handed alpha
Helix 12
12
C
42 52Right-handed alpha
Helix 13
13
C
58 68Right-handed alpha
Helix 14
14
C
79 86Right-handed alpha
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There are 3 sheets in PDB entry 3R07. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
144 154anti-parallel
Strand 4
A
157 165anti-parallel
Strand 5
A
85 93anti-parallel
Strand 6
A
35 39anti-parallel
Strand 7
A
1 7parallel
Strand 8
A
224 228parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
44 47parallel
Strand 3
A
79 81anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 10first strand
Strand 2
C
15 23anti-parallel
Strand 3
C
26 35anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il