Analysis of interatomic Contacts of Structural Units in PDB entry:
3R0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3R0Q entry

There are 4 chains in PDB entry 3R0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	TYR 35	GLU 383
G	ASP 31	GLU 383
A	GLN 34	GLU 383
E	TYR 35	GLU 383

There are 46 helices in PDB entry 3R0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	C	37	40	Right-handed 310
Helix 2	2	C	41	50	Right-handed alpha
Helix 3	3	C	51	64	Right-handed alpha
Helix 4	4	C	82	91	Right-handed alpha
Helix 5	5	C	104	115	Right-handed alpha
Helix 6	6	C	127	131	Right-handed 310
Helix 7	7	C	154	165	Right-handed alpha
Helix 8	8	C	187	213	Right-handed alpha
Helix 9	9	C	218	220	Right-handed 310
Helix 10	10	C	221	234	Right-handed alpha
Helix 11	11	C	243	247	Right-handed 310
Helix 12	12	C	263	267	Right-handed 310
Helix 13	13	G	32	39	Right-handed alpha
Helix 14	14	G	41	50	Right-handed alpha
Helix 15	15	G	51	65	Right-handed alpha
Helix 16	16	G	82	92	Right-handed alpha
Helix 17	17	G	103	115	Right-handed alpha
Helix 18	18	G	154	165	Right-handed alpha
Helix 19	19	G	187	212	Right-handed alpha
Helix 20	20	G	218	220	Right-handed 310
Helix 21	21	G	221	234	Right-handed alpha
Helix 22	22	G	243	247	Right-handed 310
Helix 23	23	A	35	40	Right-handed 310
Helix 24	24	A	41	50	Right-handed alpha
Helix 25	25	A	51	64	Right-handed alpha
Helix 26	26	A	65	69	Right-handed 310
Helix 27	27	A	82	91	Right-handed alpha
Helix 28	28	A	104	114	Right-handed alpha
Helix 29	29	A	150	153	Right-handed 310
Helix 30	30	A	154	165	Right-handed alpha
Helix 31	31	A	187	213	Right-handed alpha
Helix 32	32	A	218	220	Right-handed 310
Helix 33	33	A	221	234	Right-handed alpha
Helix 34	34	A	243	247	Right-handed 310
Helix 35	35	A	264	268	Right-handed 310
Helix 36	36	E	41	50	Right-handed alpha
Helix 37	37	E	51	64	Right-handed alpha
Helix 38	38	E	65	69	Right-handed 310
Helix 39	39	E	82	91	Right-handed alpha
Helix 40	40	E	103	115	Right-handed alpha
Helix 41	41	E	154	165	Right-handed alpha
Helix 42	42	E	187	213	Right-handed alpha
Helix 43	43	E	218	220	Right-handed 310
Helix 44	44	E	221	234	Right-handed alpha
Helix 45	45	E	243	247	Right-handed 310
Helix 46	46	E	263	267	Right-handed 310

There are 16 sheets in PDB entry 3R0Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	125	first strand
Strand 2	C	95	100	parallel
Strand 3	C	73	77	parallel
Strand 4	C	137	142	parallel
Strand 5	C	166	173	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	240	first strand
Strand 2	C	324	335	anti-parallel
Strand 3	C	283	299	anti-parallel
Strand 4	C	176	184	anti-parallel
Strand 5	C	252	258	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	240	first strand
Strand 2	C	324	335	anti-parallel
Strand 3	C	283	299	anti-parallel
Strand 4	C	302	311	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	276	first strand
Strand 2	C	340	349	anti-parallel
Strand 3	C	357	366	anti-parallel
Strand 4	C	376	382	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	121	125	first strand
Strand 2	G	96	100	parallel
Strand 3	G	74	77	parallel
Strand 4	G	137	141	parallel
Strand 5	G	166	173	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	238	240	first strand
Strand 2	G	324	334	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	176	184	anti-parallel
Strand 5	G	252	258	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	238	240	first strand
Strand 2	G	324	334	anti-parallel
Strand 3	G	284	298	anti-parallel
Strand 4	G	303	311	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	270	276	first strand
Strand 2	G	340	349	anti-parallel
Strand 3	G	357	366	anti-parallel
Strand 4	G	374	382	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	125	first strand
Strand 2	A	95	100	parallel
Strand 3	A	73	77	parallel
Strand 4	A	137	142	parallel
Strand 5	A	166	173	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	324	335	anti-parallel
Strand 3	A	283	299	anti-parallel
Strand 4	A	176	184	anti-parallel
Strand 5	A	252	258	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	324	335	anti-parallel
Strand 3	A	283	299	anti-parallel
Strand 4	A	302	311	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	276	first strand
Strand 2	A	340	349	anti-parallel
Strand 3	A	357	366	anti-parallel
Strand 4	A	376	382	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	123	first strand
Strand 2	E	95	99	parallel
Strand 3	E	73	77	parallel
Strand 4	E	137	141	parallel
Strand 5	E	166	173	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	240	first strand
Strand 2	E	324	334	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	176	184	anti-parallel
Strand 5	E	252	258	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	240	first strand
Strand 2	E	324	334	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	303	311	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	276	first strand
Strand 2	E	340	349	anti-parallel
Strand 3	E	357	366	anti-parallel
Strand 4	E	377	381	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3R0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
3R0Q