Analysis of interatomic Contacts of Structural Units in PDB entry:
3R1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R1J entry

There are 2 chains in PDB entry 3R1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5ALA 296
B
 ILE 5LEU 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3R1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 43Right-handed alpha
Helix 2
2
A
54 66Right-handed alpha
Helix 3
3
A
131 137Right-handed alpha
Helix 4
4
A
139 147Right-handed alpha
Helix 5
5
A
212 228Right-handed alpha
Helix 6
6
A
229 231Right-handed 310
Helix 7
7
B
28 43Right-handed alpha
Helix 8
8
B
54 66Right-handed alpha
Helix 9
9
B
131 137Right-handed alpha
Helix 10
10
B
139 147Right-handed alpha
Helix 11
11
B
212 228Right-handed alpha
Helix 12
12
B
229 231Right-handed 310
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There are 8 sheets in PDB entry 3R1J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
16 19anti-parallel
Strand 3
A
44 47parallel
Strand 4
A
243 247anti-parallel
Strand 5
A
111 118anti-parallel
Strand 6
A
265 271anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
251 255anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
150 154anti-parallel
Strand 3
A
182 186anti-parallel
Strand 4
A
285 288anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
197 199anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
16 19anti-parallel
Strand 3
B
44 47parallel
Strand 4
B
243 247anti-parallel
Strand 5
B
111 118anti-parallel
Strand 6
B
265 271anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
126 130anti-parallel
Strand 3
B
251 255anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
150 154anti-parallel
Strand 3
B
182 186anti-parallel
Strand 4
B
285 288anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
197 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il