Analysis of interatomic Contacts of Structural Units in PDB entry:
3R2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R2J entry

There are 4 chains in PDB entry 3R2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 16GLU 214
B
 PRO 15GLU 214
C
 LEU 17GLU 214
D
 THR 16GLU 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 3R2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 39Right-handed alpha
Helix 2
2
A
49 51Right-handed 310
Helix 3
3
A
52 63Right-handed alpha
Helix 4
4
A
82 86Right-handed 310
Helix 5
5
A
97 101Right-handed 310
Helix 6
6
A
138 147Right-handed alpha
Helix 7
7
A
160 172Right-handed alpha
Helix 8
8
A
187 189Right-handed 310
Helix 9
9
A
190 200Right-handed alpha
Helix 10
10
A
207 209Right-handed 310
Helix 11
11
B
34 39Right-handed alpha
Helix 12
12
B
51 63Right-handed alpha
Helix 13
13
B
82 86Right-handed 310
Helix 14
14
B
97 101Right-handed 310
Helix 15
15
B
107 111Right-handed 310
Helix 16
16
B
138 146Right-handed alpha
Helix 17
17
B
160 172Right-handed alpha
Helix 18
18
B
187 189Right-handed 310
Helix 19
19
B
190 201Right-handed alpha
Helix 20
20
B
207 209Right-handed 310
Helix 21
21
C
34 39Right-handed alpha
Helix 22
22
C
48 50Right-handed 310
Helix 23
23
C
51 63Right-handed alpha
Helix 24
24
C
82 86Right-handed 310
Helix 25
25
C
138 146Right-handed alpha
Helix 26
26
C
160 172Right-handed alpha
Helix 27
27
C
187 189Right-handed 310
Helix 28
28
C
190 200Right-handed alpha
Helix 29
29
C
207 209Right-handed 310
Helix 30
30
D
34 39Right-handed alpha
Helix 31
31
D
49 51Right-handed 310
Helix 32
32
D
52 63Right-handed alpha
Helix 33
33
D
82 86Right-handed 310
Helix 34
34
D
97 101Right-handed 310
Helix 35
35
D
107 111Right-handed 310
Helix 36
36
D
138 146Right-handed alpha
Helix 37
37
D
160 172Right-handed alpha
Helix 38
38
D
187 189Right-handed 310
Helix 39
39
D
190 201Right-handed alpha
Helix 40
40
D
207 209Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 3R2J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
211 212parallel
Back to list of sheets
Back to top of page

There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
175 183parallel
Strand 3
A
150 155parallel
Strand 4
A
26 31parallel
Strand 5
A
67 73parallel
Strand 6
A
113 117parallel
Strand 7
B
113 117anti-parallel
Strand 8
B
67 73parallel
Strand 9
B
26 31parallel
Strand 10
B
150 156parallel
Strand 11
B
175 184parallel
Strand 12
B
204 206parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
211 212parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 20first strand
Strand 2
C
211 212parallel
Back to list of sheets
Back to top of page

There are 12 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 206first strand
Strand 2
C
175 184parallel
Strand 3
C
150 156parallel
Strand 4
C
26 31parallel
Strand 5
C
67 73parallel
Strand 6
C
113 117parallel
Strand 7
D
113 117anti-parallel
Strand 8
D
67 73parallel
Strand 9
D
26 31parallel
Strand 10
D
150 156parallel
Strand 11
D
175 184parallel
Strand 12
D
204 206parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 20first strand
Strand 2
D
211 212parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il