Analysis of interatomic Contacts of Structural Units in PDB entry:
3R38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R38 entry

There is 1 chain in PDB entry 3R38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -9PHE 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3R38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 32Right-handed alpha
Helix 2
2
A
48 61Right-handed alpha
Helix 3
3
A
86 92Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
98 107Right-handed alpha
Helix 6
6
A
124 134Right-handed alpha
Helix 7
7
A
163 175Right-handed alpha
Helix 8
8
A
189 202Right-handed alpha
Helix 9
9
A
232 246Right-handed alpha
Helix 10
10
A
256 259Right-handed 310
Helix 11
11
A
260 270Right-handed alpha
Helix 12
12
A
303 305Right-handed 310
Helix 13
13
A
306 317Right-handed alpha
Helix 14
14
A
334 341Right-handed alpha
Helix 15
15
A
369 383Right-handed alpha
Helix 16
16
A
392 397Right-handed alpha
Helix 17
17
A
401 409Right-handed alpha
Helix 18
18
A
422 429Right-handed 310
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There are 7 sheets in PDB entry 3R38. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
386 390parallel
Strand 3
A
3 7anti-parallel
Strand 4
A
412 416anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
249 253parallel
Strand 3
A
281 284anti-parallel
Strand 4
A
273 275anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
222 223parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
71 75anti-parallel
Strand 3
A
40 43anti-parallel
Strand 4
A
226 228parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
108 112parallel
Strand 3
A
144 148anti-parallel
Strand 4
A
137 141anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
180 184parallel
Strand 3
A
213 217anti-parallel
Strand 4
A
206 207anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
320 324parallel
Strand 3
A
351 355anti-parallel
Strand 4
A
345 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il