Analysis of interatomic Contacts of Structural Units in PDB entry:
3R3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R3J entry

There are 6 chains in PDB entry 3R3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 55LEU 510
B
 LEU 55LEU 510
C
 LEU 55LEU 510
D
 LEU 55LEU 510
E
 LEU 55LEU 510
F
 LEU 55LEU 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are117 helices in PDB entry 3R3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 81Right-handed alpha
Helix 2
2
A
84 98Right-handed alpha
Helix 3
3
A
98 105Right-handed alpha
Helix 4
4
A
106 116Right-handed alpha
Helix 5
5
A
163 181Right-handed alpha
Helix 6
6
A
200 216Right-handed alpha
Helix 7
7
A
217 219Right-handed 310
Helix 8
8
A
233 249Right-handed alpha
Helix 9
9
A
259 263Right-handed 310
Helix 10
10
A
270 286Right-handed alpha
Helix 11
11
A
302 315Right-handed alpha
Helix 12
12
A
336 349Right-handed alpha
Helix 13
13
A
353 360Right-handed 310
Helix 14
14
A
371 375Right-handed 310
Helix 15
15
A
390 401Right-handed alpha
Helix 16
16
A
416 423Right-handed alpha
Helix 17
17
A
430 435Right-handed alpha
Helix 18
18
A
436 452Right-handed alpha
Helix 19
19
A
456 484Right-handed alpha
Helix 20
20
A
487 507Right-handed alpha
Helix 21
21
B
65 81Right-handed alpha
Helix 22
22
B
84 98Right-handed alpha
Helix 23
23
B
98 105Right-handed alpha
Helix 24
24
B
106 116Right-handed alpha
Helix 25
25
B
163 181Right-handed alpha
Helix 26
26
B
200 216Right-handed alpha
Helix 27
27
B
217 219Right-handed 310
Helix 28
28
B
233 249Right-handed alpha
Helix 29
29
B
259 263Right-handed 310
Helix 30
30
B
270 286Right-handed alpha
Helix 31
31
B
302 315Right-handed alpha
Helix 32
32
B
336 349Right-handed alpha
Helix 33
33
B
353 360Right-handed 310
Helix 34
34
B
390 400Right-handed alpha
Helix 35
35
B
416 423Right-handed alpha
Helix 36
36
B
430 435Right-handed alpha
Helix 37
37
B
436 452Right-handed alpha
Helix 38
38
B
456 484Right-handed alpha
Helix 39
39
B
487 507Right-handed alpha
Helix 40
40
C
65 81Right-handed alpha
Helix 41
41
C
84 98Right-handed alpha
Helix 42
42
C
98 105Right-handed alpha
Helix 43
43
C
106 116Right-handed alpha
Helix 44
44
C
163 181Right-handed alpha
Helix 45
45
C
200 216Right-handed alpha
Helix 46
46
C
217 219Right-handed 310
Helix 47
47
C
233 249Right-handed alpha
Helix 48
48
C
259 263Right-handed 310
Helix 49
49
C
270 286Right-handed alpha
Helix 50
50
C
302 315Right-handed alpha
Helix 51
51
C
336 349Right-handed alpha
Helix 52
52
C
353 361Right-handed 310
Helix 53
53
C
392 399Right-handed alpha
Helix 54
54
C
416 423Right-handed alpha
Helix 55
55
C
430 435Right-handed alpha
Helix 56
56
C
436 452Right-handed alpha
Helix 57
57
C
456 484Right-handed alpha
Helix 58
58
C
487 507Right-handed alpha
Helix 59
59
D
65 81Right-handed alpha
Helix 60
60
D
84 98Right-handed alpha
Helix 61
61
D
98 105Right-handed alpha
Helix 62
62
D
106 116Right-handed alpha
Helix 63
63
D
163 181Right-handed alpha
Helix 64
64
D
200 216Right-handed alpha
Helix 65
65
D
217 219Right-handed 310
Helix 66
66
D
233 249Right-handed alpha
Helix 67
67
D
259 263Right-handed 310
Helix 68
68
D
270 286Right-handed alpha
Helix 69
69
D
302 315Right-handed alpha
Helix 70
70
D
336 349Right-handed alpha
Helix 71
71
D
353 360Right-handed 310
Helix 72
72
D
371 375Right-handed 310
Helix 73
73
D
390 400Right-handed alpha
Helix 74
74
D
416 423Right-handed alpha
Helix 75
75
D
430 435Right-handed alpha
Helix 76
76
D
436 452Right-handed alpha
Helix 77
77
D
456 484Right-handed alpha
Helix 78
78
D
487 507Right-handed alpha
Helix 79
79
E
65 81Right-handed alpha
Helix 80
80
E
84 98Right-handed alpha
Helix 81
81
E
98 105Right-handed alpha
Helix 82
82
E
106 116Right-handed alpha
Helix 83
83
E
163 181Right-handed alpha
Helix 84
84
E
200 216Right-handed alpha
Helix 85
85
E
217 219Right-handed 310
Helix 86
86
E
233 249Right-handed alpha
Helix 87
87
E
259 263Right-handed 310
Helix 88
88
E
270 286Right-handed alpha
Helix 89
89
E
302 315Right-handed alpha
Helix 90
90
E
336 349Right-handed alpha
Helix 91
91
E
353 360Right-handed 310
Helix 92
92
E
390 401Right-handed alpha
Helix 93
93
E
416 423Right-handed alpha
Helix 94
94
E
430 435Right-handed alpha
Helix 95
95
E
436 452Right-handed alpha
Helix 96
96
E
456 484Right-handed alpha
Helix 97
97
E
487 507Right-handed alpha
Helix 98
98
F
65 81Right-handed alpha
Helix 99
99
F
84 98Right-handed alpha
Helix 100
100
F
98 105Right-handed alpha
Helix 101
101
F
106 116Right-handed alpha
Helix 102
102
F
163 181Right-handed alpha
Helix 103
103
F
200 216Right-handed alpha
Helix 104
104
F
217 219Right-handed 310
Helix 105
105
F
233 249Right-handed alpha
Helix 106
106
F
259 263Right-handed 310
Helix 107
107
F
270 286Right-handed alpha
Helix 108
108
F
302 315Right-handed alpha
Helix 109
109
F
336 349Right-handed alpha
Helix 110
110
F
354 361Right-handed 310
Helix 111
111
F
371 375Right-handed 310
Helix 112
112
F
390 400Right-handed alpha
Helix 113
113
F
416 423Right-handed alpha
Helix 114
114
F
430 435Right-handed alpha
Helix 115
115
F
436 452Right-handed alpha
Helix 116
116
F
456 484Right-handed alpha
Helix 117
117
F
487 507Right-handed alpha
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There are 13 sheets in PDB entry 3R3J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
152 158parallel
Strand 3
A
187 192parallel
Strand 4
A
135 146anti-parallel
Strand 5
A
120 129anti-parallel
Strand 6
E
120 129anti-parallel
Strand 7
E
135 146anti-parallel
Strand 8
E
186 192anti-parallel
Strand 9
E
152 158parallel
Strand 10
E
224 227parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 299first strand
Strand 2
A
379 382parallel
Strand 3
A
404 406parallel
Strand 4
A
427 429parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
328 330anti-parallel
Strand 3
A
365 367anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 227first strand
Strand 2
B
152 158parallel
Strand 3
B
186 192parallel
Strand 4
B
135 146anti-parallel
Strand 5
B
120 129anti-parallel
Strand 6
C
120 129anti-parallel
Strand 7
C
135 146anti-parallel
Strand 8
C
186 192anti-parallel
Strand 9
C
152 158parallel
Strand 10
C
224 227parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 329first strand
Strand 2
B
319 323anti-parallel
Strand 3
B
296 299parallel
Strand 4
B
379 382parallel
Strand 5
B
404 406parallel
Strand 6
B
427 429parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
319 321first strand
Strand 2
C
296 298parallel
Strand 3
C
379 381parallel
Strand 4
C
404 406parallel
Strand 5
C
427 429parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 330first strand
Strand 2
C
365 367anti-parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
224 227first strand
Strand 2
D
152 158parallel
Strand 3
D
186 192parallel
Strand 4
D
135 146anti-parallel
Strand 5
D
120 129anti-parallel
Strand 6
F
120 129anti-parallel
Strand 7
F
135 146anti-parallel
Strand 8
F
186 192anti-parallel
Strand 9
F
152 158parallel
Strand 10
F
224 227parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
296 298first strand
Strand 2
D
379 381parallel
Strand 3
D
404 406parallel
Strand 4
D
427 429parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
322 323first strand
Strand 2
D
328 330anti-parallel
Strand 3
D
365 367anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
296 299first strand
Strand 2
E
379 382parallel
Strand 3
E
404 406parallel
Strand 4
E
427 429parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
296 298first strand
Strand 2
F
379 381parallel
Strand 3
F
404 406parallel
Strand 4
F
427 429parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
322 323first strand
Strand 2
F
328 329anti-parallel
Strand 3
F
366 367anti-parallel
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