Analysis of interatomic Contacts of Structural Units in PDB entry:
3R5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R5M entry

There are 4 chains in PDB entry 3R5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 227PRO 458
B
 HIS 1ASP 10
C
 GLU 228PRO 458
D
 HIS 1ASP 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3R5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
231 242Right-handed alpha
Helix 2
2
A
263 285Right-handed alpha
Helix 3
3
A
293 317Right-handed alpha
Helix 4
4
A
334 339Right-handed alpha
Helix 5
5
A
342 353Right-handed alpha
Helix 6
6
A
353 359Right-handed alpha
Helix 7
7
A
363 376Right-handed alpha
Helix 8
8
A
385 408Right-handed alpha
Helix 9
9
A
413 420Right-handed alpha
Helix 10
10
A
420 442Right-handed alpha
Helix 11
11
A
448 455Right-handed alpha
Helix 12
12
B
1 10Right-handed alpha
Helix 13
13
C
231 243Right-handed alpha
Helix 14
14
C
263 285Right-handed alpha
Helix 15
15
C
288 292Right-handed 310
Helix 16
16
C
293 317Right-handed alpha
Helix 17
17
C
334 339Right-handed alpha
Helix 18
18
C
342 353Right-handed alpha
Helix 19
19
C
353 361Right-handed alpha
Helix 20
20
C
363 376Right-handed alpha
Helix 21
21
C
385 408Right-handed alpha
Helix 22
22
C
413 420Right-handed alpha
Helix 23
23
C
421 442Right-handed alpha
Helix 24
24
C
448 456Right-handed alpha
Helix 25
25
D
1 8Right-handed alpha
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There are 2 sheets in PDB entry 3R5M. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
330 333anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
323 325first strand
Strand 2
C
331 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il