Analysis of interatomic Contacts of Structural Units in PDB entry:
3R5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R5T entry

There is 1 chain in PDB entry 3R5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 31LEU 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3R5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 68Right-handed alpha
Helix 2
2
A
87 94Right-handed alpha
Helix 3
3
A
106 114Right-handed alpha
Helix 4
4
A
128 130Right-handed 310
Helix 5
5
A
131 137Right-handed alpha
Helix 6
6
A
150 163Right-handed alpha
Helix 7
7
A
164 184Right-handed alpha
Helix 8
8
A
212 221Right-handed alpha
Helix 9
9
A
229 233Right-handed 310
Helix 10
10
A
246 253Right-handed 310
Helix 11
11
A
264 273Right-handed alpha
Helix 12
12
A
274 278Right-handed 310
Helix 13
13
A
280 285Right-handed alpha
Helix 14
14
A
299 315Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3R5T. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
44 47anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 101first strand
Strand 2
A
72 77parallel
Strand 3
A
54 56parallel
Strand 4
A
117 121parallel
Strand 5
A
141 144parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
205 208anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
257 260parallel
Strand 5
A
288 290parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il