Analysis of interatomic Contacts of Structural Units in PDB entry:
3R7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R7D entry

There are 3 chains in PDB entry 3R7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 291
B
 MET 1THR 291
C
 MET 1THR 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3R7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
11 28Right-handed alpha
Helix 3
3
A
47 61Right-handed alpha
Helix 4
4
A
72 77Right-handed alpha
Helix 5
5
A
80 91Right-handed alpha
Helix 6
6
A
105 113Right-handed alpha
Helix 7
7
A
127 143Right-handed alpha
Helix 8
8
A
155 158Right-handed 310
Helix 9
9
A
159 172Right-handed alpha
Helix 10
10
A
181 185Right-handed 310
Helix 11
11
A
196 204Right-handed alpha
Helix 12
12
A
219 225Right-handed alpha
Helix 13
13
A
225 231Right-handed alpha
Helix 14
14
A
233 238Right-handed alpha
Helix 15
15
A
259 263Right-handed 310
Helix 16
16
A
269 290Right-handed alpha
Helix 17
17
B
6 10Right-handed 310
Helix 18
18
B
11 27Right-handed alpha
Helix 19
19
B
47 61Right-handed alpha
Helix 20
20
B
72 77Right-handed alpha
Helix 21
21
B
80 92Right-handed alpha
Helix 22
22
B
105 113Right-handed alpha
Helix 23
23
B
127 143Right-handed alpha
Helix 24
24
B
155 158Right-handed 310
Helix 25
25
B
159 172Right-handed alpha
Helix 26
26
B
181 185Right-handed 310
Helix 27
27
B
196 204Right-handed alpha
Helix 28
28
B
225 231Right-handed alpha
Helix 29
29
B
233 238Right-handed alpha
Helix 30
30
B
259 263Right-handed 310
Helix 31
31
B
269 290Right-handed alpha
Helix 32
32
C
6 10Right-handed 310
Helix 33
33
C
11 27Right-handed alpha
Helix 34
34
C
47 61Right-handed alpha
Helix 35
35
C
72 77Right-handed alpha
Helix 36
36
C
80 92Right-handed alpha
Helix 37
37
C
105 113Right-handed alpha
Helix 38
38
C
127 143Right-handed alpha
Helix 39
39
C
159 172Right-handed alpha
Helix 40
40
C
181 185Right-handed 310
Helix 41
41
C
196 204Right-handed alpha
Helix 42
42
C
222 231Right-handed alpha
Helix 43
43
C
233 239Right-handed alpha
Helix 44
44
C
259 263Right-handed 310
Helix 45
45
C
269 290Right-handed alpha
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There are 6 sheets in PDB entry 3R7D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 69first strand
Strand 2
A
38 43parallel
Strand 3
A
95 99parallel
Strand 4
A
117 121parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
175 179parallel
Strand 3
A
149 153parallel
Strand 4
A
206 209parallel
Strand 5
A
245 247parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 69first strand
Strand 2
B
38 43parallel
Strand 3
B
95 99parallel
Strand 4
B
117 121parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
175 179parallel
Strand 3
B
149 153parallel
Strand 4
B
206 209parallel
Strand 5
B
245 247parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 69first strand
Strand 2
C
38 43parallel
Strand 3
C
95 99parallel
Strand 4
C
117 121parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 194first strand
Strand 2
C
175 179parallel
Strand 3
C
149 153parallel
Strand 4
C
206 209parallel
Strand 5
C
245 247parallel
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