Analysis of interatomic Contacts of Structural Units in PDB entry:
3R8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R8E entry

There is 1 chain in PDB entry 3R8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3R8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 39Right-handed alpha
Helix 2
2
A
39 55Right-handed alpha
Helix 3
3
A
89 98Right-handed alpha
Helix 4
4
A
108 120Right-handed alpha
Helix 5
5
A
157 161Right-handed 310
Helix 6
6
A
169 174Right-handed alpha
Helix 7
7
A
174 189Right-handed alpha
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
A
203 213Right-handed alpha
Helix 10
10
A
215 241Right-handed alpha
Helix 11
11
A
249 253Right-handed 310
Helix 12
12
A
254 270Right-handed alpha
Helix 13
13
A
271 276Right-handed alpha
Helix 14
14
A
285 287Right-handed 310
Helix 15
15
A
288 300Right-handed alpha
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There are 3 sheets in PDB entry 3R8E. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 28first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
2 6anti-parallel
Strand 4
A
60 65parallel
Strand 5
A
102 107parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
76 78anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
137 143anti-parallel
Strand 3
A
128 133anti-parallel
Strand 4
A
244 248parallel
Strand 5
A
279 282parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il