Analysis of interatomic Contacts of Structural Units in PDB entry:
3R8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R8F entry

There are 4 chains in PDB entry 3R8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 77CYS 399
B
 ASP 77CYS 399
C
 ASP 77CYS 399
D
 ASP 77ILE 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 76 helices in PDB entry 3R8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
94 107Right-handed alpha
Helix 2
2
A
124 139Right-handed alpha
Helix 3
3
A
148 161Right-handed alpha
Helix 4
4
A
163 173Right-handed alpha
Helix 5
5
A
181 186Right-handed 310
Helix 6
6
A
188 205Right-handed alpha
Helix 7
7
A
216 220Right-handed 310
Helix 8
8
A
224 233Right-handed alpha
Helix 9
9
A
242 257Right-handed alpha
Helix 10
10
A
262 273Right-handed alpha
Helix 11
11
A
275 290Right-handed alpha
Helix 12
12
A
290 304Right-handed alpha
Helix 13
13
A
306 311Right-handed alpha
Helix 14
14
A
311 316Right-handed alpha
Helix 15
15
A
319 325Right-handed alpha
Helix 16
16
A
332 346Right-handed alpha
Helix 17
17
A
350 359Right-handed alpha
Helix 18
18
A
364 376Right-handed alpha
Helix 19
19
A
382 399Right-handed alpha
Helix 20
20
B
94 107Right-handed alpha
Helix 21
21
B
124 139Right-handed alpha
Helix 22
22
B
148 161Right-handed alpha
Helix 23
23
B
163 173Right-handed alpha
Helix 24
24
B
181 186Right-handed 310
Helix 25
25
B
188 205Right-handed alpha
Helix 26
26
B
216 220Right-handed 310
Helix 27
27
B
224 233Right-handed alpha
Helix 28
28
B
242 257Right-handed alpha
Helix 29
29
B
262 273Right-handed alpha
Helix 30
30
B
275 290Right-handed alpha
Helix 31
31
B
290 304Right-handed alpha
Helix 32
32
B
306 311Right-handed alpha
Helix 33
33
B
311 316Right-handed alpha
Helix 34
34
B
319 325Right-handed alpha
Helix 35
35
B
332 346Right-handed alpha
Helix 36
36
B
350 359Right-handed alpha
Helix 37
37
B
364 376Right-handed alpha
Helix 38
38
B
382 399Right-handed alpha
Helix 39
39
C
94 107Right-handed alpha
Helix 40
40
C
124 139Right-handed alpha
Helix 41
41
C
148 161Right-handed alpha
Helix 42
42
C
163 173Right-handed alpha
Helix 43
43
C
181 186Right-handed 310
Helix 44
44
C
188 205Right-handed alpha
Helix 45
45
C
216 220Right-handed 310
Helix 46
46
C
224 233Right-handed alpha
Helix 47
47
C
242 257Right-handed alpha
Helix 48
48
C
262 273Right-handed alpha
Helix 49
49
C
275 290Right-handed alpha
Helix 50
50
C
290 304Right-handed alpha
Helix 51
51
C
306 311Right-handed alpha
Helix 52
52
C
311 316Right-handed alpha
Helix 53
53
C
319 325Right-handed alpha
Helix 54
54
C
332 346Right-handed alpha
Helix 55
55
C
350 359Right-handed alpha
Helix 56
56
C
364 376Right-handed alpha
Helix 57
57
C
382 399Right-handed alpha
Helix 58
58
D
94 107Right-handed alpha
Helix 59
59
D
124 139Right-handed alpha
Helix 60
60
D
148 161Right-handed alpha
Helix 61
61
D
163 173Right-handed alpha
Helix 62
62
D
181 186Right-handed 310
Helix 63
63
D
188 205Right-handed alpha
Helix 64
64
D
216 220Right-handed 310
Helix 65
65
D
224 233Right-handed alpha
Helix 66
66
D
242 257Right-handed alpha
Helix 67
67
D
262 273Right-handed alpha
Helix 68
68
D
275 290Right-handed alpha
Helix 69
69
D
290 304Right-handed alpha
Helix 70
70
D
306 311Right-handed alpha
Helix 71
71
D
311 316Right-handed alpha
Helix 72
72
D
319 325Right-handed alpha
Helix 73
73
D
332 346Right-handed alpha
Helix 74
74
D
350 359Right-handed alpha
Helix 75
75
D
364 376Right-handed alpha
Helix 76
76
D
382 399Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3R8F. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
176 180parallel
Strand 3
A
208 213parallel
Strand 4
A
114 119parallel
Strand 5
A
235 239parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
176 180parallel
Strand 3
B
208 213parallel
Strand 4
B
114 119parallel
Strand 5
B
235 239parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 147first strand
Strand 2
C
176 180parallel
Strand 3
C
208 213parallel
Strand 4
C
114 119parallel
Strand 5
C
235 239parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
143 147first strand
Strand 2
D
176 180parallel
Strand 3
D
208 213parallel
Strand 4
D
114 119parallel
Strand 5
D
235 239parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il