Analysis of interatomic Contacts of Structural Units in PDB entry:
3R8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R8J entry

There are 2 chains in PDB entry 3R8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 19ASN 198
B
 ALA 19ASN 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3R8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 74Right-handed alpha
Helix 2
2
A
112 117Right-handed alpha
Helix 3
3
A
147 165Right-handed alpha
Helix 4
4
B
57 74Right-handed alpha
Helix 5
5
B
112 117Right-handed alpha
Helix 6
6
B
147 165Right-handed alpha
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There are 2 sheets in PDB entry 3R8J. Click on sheet of interest to get list of strands forming it: A, B,

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
135 142anti-parallel
Strand 4
A
190 195anti-parallel
Strand 5
A
174 178anti-parallel
Strand 6
A
89 94anti-parallel
Strand 7
A
103 110anti-parallel
Strand 8
A
46 55anti-parallel
Strand 9
B
46 55parallel
Strand 10
B
104 110anti-parallel
Strand 11
B
89 94anti-parallel
Strand 12
B
174 178anti-parallel
Strand 13
B
190 195anti-parallel
Strand 14
B
135 142anti-parallel
Strand 15
B
39 43anti-parallel
Strand 16
B
25 26anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 132first strand
Strand 2
A
46 55anti-parallel
Strand 3
B
46 55parallel
Strand 4
B
127 132anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il