Analysis of interatomic Contacts of Structural Units in PDB entry:
3R8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R8W entry

There are 4 chains in PDB entry 3R8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASP 360
B
 LYS 3ASP 360
C
 LYS 3ASP 360
D
 LYS 3ASP 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 3R8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 34Right-handed alpha
Helix 2
2
A
45 54Right-handed alpha
Helix 3
3
A
58 68Right-handed alpha
Helix 4
4
A
78 82Right-handed 310
Helix 5
5
A
85 88Right-handed 310
Helix 6
6
A
89 102Right-handed alpha
Helix 7
7
A
113 120Right-handed 310
Helix 8
8
A
123 128Right-handed alpha
Helix 9
9
A
168 184Right-handed alpha
Helix 10
10
A
198 212Right-handed alpha
Helix 11
11
A
213 215Right-handed 310
Helix 12
12
A
225 235Right-handed alpha
Helix 13
13
A
236 239Right-handed 310
Helix 14
14
A
245 261Right-handed alpha
Helix 15
15
A
262 265Right-handed 310
Helix 16
16
A
286 290Right-handed 310
Helix 17
17
A
297 311Right-handed alpha
Helix 18
18
A
316 331Right-handed alpha
Helix 19
19
A
335 339Right-handed 310
Helix 20
20
A
347 360Right-handed alpha
Helix 21
21
B
15 34Right-handed alpha
Helix 22
22
B
45 54Right-handed alpha
Helix 23
23
B
58 68Right-handed alpha
Helix 24
24
B
78 82Right-handed 310
Helix 25
25
B
85 88Right-handed 310
Helix 26
26
B
89 102Right-handed alpha
Helix 27
27
B
113 120Right-handed 310
Helix 28
28
B
123 128Right-handed alpha
Helix 29
29
B
140 144Right-handed 310
Helix 30
30
B
168 184Right-handed alpha
Helix 31
31
B
198 212Right-handed alpha
Helix 32
32
B
213 215Right-handed 310
Helix 33
33
B
225 235Right-handed alpha
Helix 34
34
B
236 239Right-handed 310
Helix 35
35
B
245 261Right-handed alpha
Helix 36
36
B
262 265Right-handed 310
Helix 37
37
B
286 290Right-handed 310
Helix 38
38
B
297 311Right-handed alpha
Helix 39
39
B
314 331Right-handed alpha
Helix 40
40
B
335 339Right-handed 310
Helix 41
41
B
347 360Right-handed alpha
Helix 42
42
C
15 34Right-handed alpha
Helix 43
43
C
45 54Right-handed alpha
Helix 44
44
C
58 68Right-handed alpha
Helix 45
45
C
78 83Right-handed alpha
Helix 46
46
C
85 88Right-handed 310
Helix 47
47
C
89 102Right-handed alpha
Helix 48
48
C
113 120Right-handed 310
Helix 49
49
C
123 128Right-handed alpha
Helix 50
50
C
140 144Right-handed 310
Helix 51
51
C
154 156Right-handed 310
Helix 52
52
C
168 184Right-handed alpha
Helix 53
53
C
198 212Right-handed alpha
Helix 54
54
C
213 215Right-handed 310
Helix 55
55
C
225 235Right-handed alpha
Helix 56
56
C
236 239Right-handed 310
Helix 57
57
C
245 261Right-handed alpha
Helix 58
58
C
262 265Right-handed 310
Helix 59
59
C
297 311Right-handed alpha
Helix 60
60
C
316 331Right-handed alpha
Helix 61
61
C
335 339Right-handed 310
Helix 62
62
C
347 360Right-handed alpha
Helix 63
63
D
15 34Right-handed alpha
Helix 64
64
D
45 53Right-handed alpha
Helix 65
65
D
58 68Right-handed alpha
Helix 66
66
D
78 83Right-handed alpha
Helix 67
67
D
85 88Right-handed 310
Helix 68
68
D
89 102Right-handed alpha
Helix 69
69
D
113 120Right-handed 310
Helix 70
70
D
123 128Right-handed alpha
Helix 71
71
D
168 184Right-handed alpha
Helix 72
72
D
198 212Right-handed alpha
Helix 73
73
D
213 215Right-handed 310
Helix 74
74
D
225 235Right-handed alpha
Helix 75
75
D
236 239Right-handed 310
Helix 76
76
D
245 261Right-handed alpha
Helix 77
77
D
262 265Right-handed 310
Helix 78
78
D
297 311Right-handed alpha
Helix 79
79
D
316 331Right-handed alpha
Helix 80
80
D
335 339Right-handed 310
Helix 81
81
D
347 360Right-handed alpha
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There are 10 sheets in PDB entry 3R8W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
4 12parallel
Strand 3
A
70 75parallel
Strand 4
A
278 281parallel
Strand 5
A
267 271anti-parallel
Strand 6
A
105 111anti-parallel
Strand 7
A
131 137anti-parallel
Strand 8
A
241 244parallel
Strand 9
A
188 193parallel
Strand 10
A
219 224parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
158 167anti-parallel
Strand 3
B
158 167anti-parallel
Strand 4
B
149 152anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 334first strand
Strand 2
A
344 345parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 42first strand
Strand 2
B
4 12parallel
Strand 3
B
70 75parallel
Strand 4
B
277 281parallel
Strand 5
B
267 271anti-parallel
Strand 6
B
105 111anti-parallel
Strand 7
B
131 137anti-parallel
Strand 8
B
241 244parallel
Strand 9
B
188 193parallel
Strand 10
B
219 224parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 334first strand
Strand 2
B
344 345parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 42first strand
Strand 2
C
4 12parallel
Strand 3
C
70 75parallel
Strand 4
C
277 281parallel
Strand 5
C
267 271anti-parallel
Strand 6
C
105 111anti-parallel
Strand 7
C
131 137anti-parallel
Strand 8
C
241 244parallel
Strand 9
C
188 193parallel
Strand 10
C
219 224parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 152first strand
Strand 2
C
158 167anti-parallel
Strand 3
D
158 167anti-parallel
Strand 4
D
149 152anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
333 334first strand
Strand 2
C
344 345parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 42first strand
Strand 2
D
4 12parallel
Strand 3
D
70 75parallel
Strand 4
D
277 281parallel
Strand 5
D
267 271anti-parallel
Strand 6
D
105 111anti-parallel
Strand 7
D
131 137anti-parallel
Strand 8
D
241 244parallel
Strand 9
D
188 193parallel
Strand 10
D
219 224parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
333 334first strand
Strand 2
D
344 345parallel
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