Analysis of interatomic Contacts of Structural Units in PDB entry:
3R8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R8Y entry

There are 6 chains in PDB entry 3R8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 17ILE 219
B
 ASP 5LYS 217
C
 GLU 17LYS 217
D
 GLU 17ILE 219
E
 ASP 5ILE 216
F
 GLU 17GLU 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3R8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 33Right-handed 310
Helix 2
2
A
54 64Right-handed alpha
Helix 3
3
B
5 16Right-handed alpha
Helix 4
4
B
30 33Right-handed 310
Helix 5
5
B
54 64Right-handed alpha
Helix 6
6
C
30 33Right-handed 310
Helix 7
7
C
54 64Right-handed alpha
Helix 8
8
D
30 33Right-handed 310
Helix 9
9
D
54 64Right-handed alpha
Helix 10
10
E
5 16Right-handed alpha
Helix 11
11
E
30 33Right-handed 310
Helix 12
12
E
54 64Right-handed alpha
Helix 13
13
F
30 33Right-handed 310
Helix 14
14
F
54 64Right-handed alpha
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There are 24 sheets in PDB entry 3R8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
68 75anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
111 112parallel
Strand 3
A
129 130parallel
Strand 4
A
147 148parallel
Strand 5
A
173 174parallel
Strand 6
A
191 192parallel
Strand 7
A
206 209parallel
Strand 8
A
214 218anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
117 118parallel
Strand 3
A
135 136parallel
Strand 4
A
153 154parallel
Strand 5
A
179 180parallel
Strand 6
A
197 198parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
123 124parallel
Strand 3
A
141 142parallel
Strand 4
A
167 168parallel
Strand 5
A
185 186parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
47 53anti-parallel
Strand 3
B
21 28anti-parallel
Strand 4
B
68 75anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
111 112parallel
Strand 3
B
129 130parallel
Strand 4
B
147 148parallel
Strand 5
B
173 174parallel
Strand 6
B
191 192parallel
Strand 7
B
207 209parallel
Strand 8
B
214 217anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
117 118parallel
Strand 3
B
135 136parallel
Strand 4
B
153 154parallel
Strand 5
B
179 180parallel
Strand 6
B
197 198parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
123 124parallel
Strand 3
B
141 142parallel
Strand 4
B
167 168parallel
Strand 5
B
185 186parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 43first strand
Strand 2
C
47 53anti-parallel
Strand 3
C
21 28anti-parallel
Strand 4
C
68 74anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 94first strand
Strand 2
C
111 112parallel
Strand 3
C
129 130parallel
Strand 4
C
147 148parallel
Strand 5
C
173 174parallel
Strand 6
C
191 192parallel
Strand 7
C
207 209parallel
Strand 8
C
214 217anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
117 118parallel
Strand 3
C
135 136parallel
Strand 4
C
153 154parallel
Strand 5
C
179 180parallel
Strand 6
C
197 198parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
123 124parallel
Strand 3
C
141 142parallel
Strand 4
C
167 168parallel
Strand 5
C
185 186parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 43first strand
Strand 2
D
47 53anti-parallel
Strand 3
D
21 28anti-parallel
Strand 4
D
68 74anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 94first strand
Strand 2
D
111 112parallel
Strand 3
D
129 130parallel
Strand 4
D
147 148parallel
Strand 5
D
173 174parallel
Strand 6
D
191 192parallel
Strand 7
D
206 209parallel
Strand 8
D
214 218anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 100first strand
Strand 2
D
117 118parallel
Strand 3
D
135 136parallel
Strand 4
D
153 154parallel
Strand 5
D
179 180parallel
Strand 6
D
197 198parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 106first strand
Strand 2
D
123 124parallel
Strand 3
D
141 142parallel
Strand 4
D
167 168parallel
Strand 5
D
185 186parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 43first strand
Strand 2
E
47 53anti-parallel
Strand 3
E
21 28anti-parallel
Strand 4
E
68 74anti-parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
93 94first strand
Strand 2
E
111 112parallel
Strand 3
E
129 130parallel
Strand 4
E
147 148parallel
Strand 5
E
173 174parallel
Strand 6
E
191 192parallel
Strand 7
E
207 209parallel
Strand 8
E
214 215anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 100first strand
Strand 2
E
117 118parallel
Strand 3
E
135 136parallel
Strand 4
E
153 154parallel
Strand 5
E
179 180parallel
Strand 6
E
197 198parallel
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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
105 106first strand
Strand 2
E
123 124parallel
Strand 3
E
141 142parallel
Strand 4
E
167 168parallel
Strand 5
E
185 186parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
40 43first strand
Strand 2
F
47 53anti-parallel
Strand 3
F
21 28anti-parallel
Strand 4
F
68 74anti-parallel
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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
93 94first strand
Strand 2
F
111 112parallel
Strand 3
F
129 130parallel
Strand 4
F
147 148parallel
Strand 5
F
173 174parallel
Strand 6
F
191 192parallel
Strand 7
F
207 209parallel
Strand 8
F
214 217anti-parallel
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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
99 100first strand
Strand 2
F
117 118parallel
Strand 3
F
135 136parallel
Strand 4
F
153 154parallel
Strand 5
F
179 180parallel
Strand 6
F
197 198parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
105 106first strand
Strand 2
F
123 124parallel
Strand 3
F
141 142parallel
Strand 4
F
167 168parallel
Strand 5
F
185 186parallel
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