Analysis of interatomic Contacts of Structural Units in PDB entry:
3R9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3R9Q entry

There are 3 chains in PDB entry 3R9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 6THR 238
B
 GLN 6GLY 245
C
 GLN 6PHE 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3R9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 28Right-handed 310
Helix 2
2
A
32 49Right-handed alpha
Helix 3
3
A
110 119Right-handed alpha
Helix 4
4
A
133 138Right-handed alpha
Helix 5
5
A
144 154Right-handed alpha
Helix 6
6
A
154 165Right-handed alpha
Helix 7
7
A
170 176Right-handed alpha
Helix 8
8
A
187 202Right-handed alpha
Helix 9
9
A
203 217Right-handed alpha
Helix 10
10
A
221 231Right-handed alpha
Helix 11
11
A
231 238Right-handed alpha
Helix 12
12
B
24 28Right-handed 310
Helix 13
13
B
32 49Right-handed alpha
Helix 14
14
B
110 119Right-handed alpha
Helix 15
15
B
133 138Right-handed alpha
Helix 16
16
B
144 154Right-handed alpha
Helix 17
17
B
154 165Right-handed alpha
Helix 18
18
B
170 176Right-handed alpha
Helix 19
19
B
187 201Right-handed alpha
Helix 20
20
B
203 217Right-handed alpha
Helix 21
21
B
221 231Right-handed alpha
Helix 22
22
B
231 243Right-handed alpha
Helix 23
23
C
24 28Right-handed 310
Helix 24
24
C
32 49Right-handed alpha
Helix 25
25
C
110 119Right-handed alpha
Helix 26
26
C
133 138Right-handed alpha
Helix 27
27
C
144 154Right-handed alpha
Helix 28
28
C
154 165Right-handed alpha
Helix 29
29
C
170 176Right-handed alpha
Helix 30
30
C
187 201Right-handed alpha
Helix 31
31
C
203 217Right-handed alpha
Helix 32
32
C
221 231Right-handed alpha
Helix 33
33
C
231 236Right-handed alpha
Helix 34
34
C
236 243Right-handed alpha
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There are 6 sheets in PDB entry 3R9Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
17 22anti-parallel
Strand 3
A
54 59parallel
Strand 4
A
100 104parallel
Strand 5
A
121 125parallel
Strand 6
A
181 183parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
129 131parallel
Strand 3
A
168 169anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 14first strand
Strand 2
B
17 22anti-parallel
Strand 3
B
54 59parallel
Strand 4
B
100 104parallel
Strand 5
B
121 125parallel
Strand 6
B
181 183parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
129 131parallel
Strand 3
B
168 169anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 14first strand
Strand 2
C
17 22anti-parallel
Strand 3
C
54 59parallel
Strand 4
C
100 104parallel
Strand 5
C
121 125parallel
Strand 6
C
181 183parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 109first strand
Strand 2
C
129 131parallel
Strand 3
C
168 169anti-parallel
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