Analysis of interatomic Contacts of Structural Units in PDB entry:
3RAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RAJ entry

There are 3 chains in PDB entry 3RAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 50TYR 279
H
 LEU 2ARG 220
L
 ILE 1ASN 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3RAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 74Right-handed alpha
Helix 2
2
A
81 91Right-handed alpha
Helix 3
3
A
106 114Right-handed alpha
Helix 4
4
A
128 133Right-handed alpha
Helix 5
5
A
135 142Right-handed alpha
Helix 6
6
A
148 155Right-handed alpha
Helix 7
7
A
183 199Right-handed alpha
Helix 8
8
A
220 225Right-handed alpha
Helix 9
9
A
226 230Right-handed 310
Helix 10
10
A
256 268Right-handed alpha
Helix 11
11
H
74 76Right-handed 310
Helix 12
12
H
193 195Right-handed 310
Helix 13
13
L
119 124Right-handed alpha
Helix 14
14
L
181 185Right-handed alpha
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There are 14 sheets in PDB entry 3RAJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
172 173anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
143 144parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 210first strand
Strand 2
A
235 244parallel
Strand 3
A
272 278parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 5first strand
Strand 2
H
22 26anti-parallel
Strand 3
H
78 80anti-parallel
Strand 4
H
71 73anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
114 118parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
35 41anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
114 118parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
107 110anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
127 131first strand
Strand 2
H
142 152anti-parallel
Strand 3
H
181 185anti-parallel
Strand 4
H
176 178anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
127 131first strand
Strand 2
H
142 152anti-parallel
Strand 3
H
188 191anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
158 161first strand
Strand 2
H
202 206anti-parallel
Strand 3
H
211 214anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 11first strand
Strand 2
L
101 103parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 23first strand
Strand 2
L
69 74anti-parallel
Strand 3
L
61 66anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
44 47first strand
Strand 2
L
32 37anti-parallel
Strand 3
L
84 89anti-parallel
Strand 4
L
95 96anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
127 133first strand
Strand 2
L
173 180anti-parallel
Strand 3
L
160 161anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
151 152first strand
Strand 2
L
144 148anti-parallel
Strand 3
L
190 194anti-parallel
Strand 4
L
203 207anti-parallel
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