Analysis of interatomic Contacts of Structural Units in PDB entry:
3RAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RAP entry

There are 2 chains in PDB entry 3RAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 MET 1ALA 167
S
 MET 1ALA 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3RAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
R
16 25Right-handed alpha
Helix 2
2
R
65 73Right-handed alpha
Helix 3
3
R
87 94Right-handed alpha
Helix 4
4
R
96 104Right-handed alpha
Helix 5
5
R
118 123Right-handed 310
Helix 6
6
R
128 138Right-handed alpha
Helix 7
7
R
150 164Right-handed alpha
Helix 8
8
S
16 25Right-handed alpha
Helix 9
9
S
46 48Right-handed 310
Helix 10
10
S
65 74Right-handed 310
Helix 11
11
S
87 93Right-handed alpha
Helix 12
12
S
96 104Right-handed alpha
Helix 13
13
S
118 123Right-handed 310
Helix 14
14
S
128 138Right-handed alpha
Helix 15
15
S
150 165Right-handed alpha
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There are 2 sheets in PDB entry 3RAP. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
141 145first strand
Strand 2
R
110 116parallel
Strand 3
R
77 83parallel
Strand 4
R
2 10parallel
Strand 5
R
49 58parallel
Strand 6
R
37 46anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
141 145first strand
Strand 2
S
111 116parallel
Strand 3
S
77 83parallel
Strand 4
S
3 10parallel
Strand 5
S
49 57parallel
Strand 6
S
38 46anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il