Analysis of interatomic Contacts of Structural Units in PDB entry:
3RAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RAR entry

There is 1 chain in PDB entry 3RAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3RAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 37Right-handed 310
Helix 2
2
A
72 83Right-handed alpha
Helix 3
3
A
84 91Right-handed alpha
Helix 4
4
A
129 133Right-handed 310
Helix 5
5
A
135 145Right-handed alpha
Helix 6
6
A
159 164Right-handed alpha
Helix 7
7
A
166 173Right-handed alpha
Helix 8
8
A
176 193Right-handed alpha
Helix 9
9
A
194 196Right-handed 310
Helix 10
10
A
209 221Right-handed alpha
Helix 11
11
A
222 225Right-handed 310
Helix 12
12
A
252 266Right-handed alpha
Helix 13
13
A
273 279Right-handed alpha
Helix 14
14
A
282 291Right-handed alpha
Helix 15
15
A
318 325Right-handed alpha
Helix 16
16
A
342 347Right-handed alpha
Helix 17
17
A
348 350Right-handed 310
Helix 18
18
A
354 366Right-handed alpha
Helix 19
19
A
370 381Right-handed alpha
Helix 20
20
A
384 388Right-handed 310
Helix 21
21
A
402 415Right-handed alpha
Helix 22
22
A
415 424Right-handed alpha
Helix 23
23
A
450 458Right-handed alpha
Helix 24
24
A
463 468Right-handed alpha
Helix 25
25
A
468 478Right-handed alpha
Helix 26
26
A
479 484Right-handed 310
Helix 27
27
A
518 527Right-handed alpha
Helix 28
28
A
528 533Right-handed 310
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There are 3 sheets in PDB entry 3RAR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
11 13anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
99 104anti-parallel
Strand 4
A
150 154anti-parallel
Strand 5
A
114 120parallel
Strand 6
A
198 208parallel
Strand 7
A
236 240parallel
Strand 8
A
333 338parallel
Strand 9
A
431 436parallel
Strand 10
A
502 505parallel
Strand 11
A
510 513anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
231 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il