Analysis of interatomic Contacts of Structural Units in PDB entry:
3RBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RBE entry

There are 8 chains in PDB entry 3RBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ILE 341
D
 G 802 G 813
E
 C 901 C 905
E
 C 907 C 919
B
 GLY 1001ILE 1341
H
 G 1805 G 1813
J
 C 1905 C 1905
J
 C 1907 C 1914
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3RBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
47 52Right-handed alpha
Helix 3
3
A
60 68Right-handed alpha
Helix 4
4
A
77 96Right-handed alpha
Helix 5
5
A
117 137Right-handed alpha
Helix 6
6
A
147 157Right-handed alpha
Helix 7
7
A
167 178Right-handed alpha
Helix 8
8
A
179 183Right-handed 310
Helix 9
9
A
187 198Right-handed alpha
Helix 10
10
A
201 206Right-handed 310
Helix 11
11
A
209 218Right-handed alpha
Helix 12
12
A
218 230Right-handed alpha
Helix 13
13
A
257 277Right-handed alpha
Helix 14
14
A
307 326Right-handed alpha
Helix 15
15
B
1010 1020Right-handed alpha
Helix 16
16
B
1021 1024Right-handed 310
Helix 17
17
B
1047 1053Right-handed alpha
Helix 18
18
B
1060 1068Right-handed alpha
Helix 19
19
B
1077 1094Right-handed alpha
Helix 20
20
B
1117 1137Right-handed alpha
Helix 21
21
B
1147 1158Right-handed alpha
Helix 22
22
B
1167 1177Right-handed alpha
Helix 23
23
B
1187 1195Right-handed alpha
Helix 24
24
B
1201 1206Right-handed 310
Helix 25
25
B
1209 1218Right-handed alpha
Helix 26
26
B
1219 1230Right-handed alpha
Helix 27
27
B
1261 1277Right-handed alpha
Helix 28
28
B
1307 1319Right-handed alpha
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There are 6 sheets in PDB entry 3RBE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
A
163 165parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
72 75parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 255first strand
Strand 2
A
330 340anti-parallel
Strand 3
A
281 290anti-parallel
Strand 4
A
295 301anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1100 1101first strand
Strand 2
B
1106 1111anti-parallel
Strand 3
B
1002 1008anti-parallel
Strand 4
B
1140 1145anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1041 1046first strand
Strand 2
B
1028 1033anti-parallel
Strand 3
B
1072 1075parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1244 1255first strand
Strand 2
B
1330 1340anti-parallel
Strand 3
B
1281 1289anti-parallel
Strand 4
B
1295 1301anti-parallel
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