Analysis of interatomic Contacts of Structural Units in PDB entry:
3RBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RBJ entry

There are 2 chains in PDB entry 3RBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5THR 207
B
 ALA 4THR 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3RBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
17 41Right-handed alpha
Helix 3
3
A
64 68Right-handed 310
Helix 4
4
A
79 82Right-handed 310
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
129 137Right-handed 310
Helix 7
7
A
167 171Right-handed 310
Helix 8
8
B
5 15Right-handed alpha
Helix 9
9
B
17 37Right-handed alpha
Helix 10
10
B
64 68Right-handed 310
Helix 11
11
B
92 96Right-handed 310
Helix 12
12
B
133 137Right-handed 310
Helix 13
13
B
167 171Right-handed 310
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There is 1 sheet ( A) in PDB entry 3RBJ.

There are 18 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 162first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
74 78anti-parallel
Strand 4
A
83 89anti-parallel
Strand 5
A
100 102parallel
Strand 6
A
115 120anti-parallel
Strand 7
A
177 185parallel
Strand 8
A
192 201anti-parallel
Strand 9
A
150 162anti-parallel
Strand 10
B
150 162anti-parallel
Strand 11
B
192 201anti-parallel
Strand 12
B
177 185anti-parallel
Strand 13
B
115 120parallel
Strand 14
B
100 102anti-parallel
Strand 15
B
83 88parallel
Strand 16
B
74 78anti-parallel
Strand 17
B
142 147anti-parallel
Strand 18
B
150 162anti-parallel
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