Analysis of interatomic Contacts of Structural Units in PDB entry:
3RBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RBT entry

There are 4 chains in PDB entry 3RBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 11LEU 240
B
 SER 6LEU 240
C
 SER 6LEU 240
D
 HIS -1LEU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3RBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 42Right-handed alpha
Helix 2
2
A
57 64Right-handed alpha
Helix 3
3
A
85 97Right-handed alpha
Helix 4
4
A
106 133Right-handed alpha
Helix 5
5
A
138 157Right-handed alpha
Helix 6
6
A
167 181Right-handed alpha
Helix 7
7
A
182 187Right-handed alpha
Helix 8
8
A
187 197Right-handed alpha
Helix 9
9
A
198 211Right-handed alpha
Helix 10
10
A
211 217Right-handed alpha
Helix 11
11
A
220 232Right-handed alpha
Helix 12
12
B
29 43Right-handed alpha
Helix 13
13
B
57 64Right-handed alpha
Helix 14
14
B
85 97Right-handed alpha
Helix 15
15
B
106 131Right-handed alpha
Helix 16
16
B
138 157Right-handed alpha
Helix 17
17
B
167 181Right-handed alpha
Helix 18
18
B
182 187Right-handed alpha
Helix 19
19
B
187 196Right-handed alpha
Helix 20
20
B
198 210Right-handed alpha
Helix 21
21
B
211 217Right-handed alpha
Helix 22
22
B
220 232Right-handed alpha
Helix 23
23
C
29 42Right-handed alpha
Helix 24
24
C
52 56Right-handed 310
Helix 25
25
C
57 64Right-handed alpha
Helix 26
26
C
85 97Right-handed alpha
Helix 27
27
C
106 131Right-handed alpha
Helix 28
28
C
139 157Right-handed alpha
Helix 29
29
C
167 181Right-handed alpha
Helix 30
30
C
182 187Right-handed alpha
Helix 31
31
C
187 197Right-handed alpha
Helix 32
32
C
198 211Right-handed alpha
Helix 33
33
C
211 218Right-handed alpha
Helix 34
34
C
220 235Right-handed alpha
Helix 35
35
C
236 238Right-handed 310
Helix 36
36
D
29 42Right-handed alpha
Helix 37
37
D
57 64Right-handed alpha
Helix 38
38
D
85 97Right-handed alpha
Helix 39
39
D
106 133Right-handed alpha
Helix 40
40
D
138 157Right-handed alpha
Helix 41
41
D
167 181Right-handed alpha
Helix 42
42
D
182 187Right-handed alpha
Helix 43
43
D
187 197Right-handed alpha
Helix 44
44
D
198 210Right-handed alpha
Helix 45
45
D
211 218Right-handed alpha
Helix 46
46
D
220 231Right-handed alpha
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There are 4 sheets in PDB entry 3RBT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
21 25parallel
Strand 3
A
71 74anti-parallel
Strand 4
A
81 83anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
46 50parallel
Strand 3
B
21 25parallel
Strand 4
B
71 74anti-parallel
Strand 5
B
81 84anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
C
46 50parallel
Strand 3
C
21 25parallel
Strand 4
C
71 74anti-parallel
Strand 5
C
81 83anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 8first strand
Strand 2
D
46 50parallel
Strand 3
D
21 25parallel
Strand 4
D
71 74anti-parallel
Strand 5
D
81 83anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il