Analysis of interatomic Contacts of Structural Units in PDB entry:
3RD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RD5 entry

There is 1 chain in PDB entry 3RD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3RD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
24 37Right-handed alpha
Helix 3
3
A
47 56Right-handed alpha
Helix 4
4
A
71 81Right-handed alpha
Helix 5
5
A
107 114Right-handed alpha
Helix 6
6
A
114 125Right-handed alpha
Helix 7
7
A
137 141Right-handed 310
Helix 8
8
A
158 184Right-handed alpha
Helix 9
9
A
196 200Right-handed 310
Helix 10
10
A
223 239Right-handed alpha
Helix 11
11
A
264 267Right-handed 310
Helix 12
12
A
268 284Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3RD5.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
40 45parallel
Strand 3
A
16 20parallel
Strand 4
A
85 90parallel
Strand 5
A
128 135parallel
Strand 6
A
189 193parallel
Strand 7
A
246 249parallel
Strand 8
A
257 259anti-parallel
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