Analysis of interatomic Contacts of Structural Units in PDB entry:
3RD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RD8 entry

There is 1 chain in PDB entry 3RD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7LYS 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3RD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 37Right-handed alpha
Helix 2
2
A
45 66Right-handed alpha
Helix 3
3
A
70 87Right-handed alpha
Helix 4
4
A
89 93Right-handed 310
Helix 5
5
A
103 121Right-handed alpha
Helix 6
6
A
136 156Right-handed alpha
Helix 7
7
A
156 175Right-handed alpha
Helix 8
8
A
194 220Right-handed alpha
Helix 9
9
A
238 252Right-handed alpha
Helix 10
10
A
263 268Right-handed alpha
Helix 11
11
A
269 297Right-handed alpha
Helix 12
12
A
325 350Right-handed alpha
Helix 13
13
A
359 385Right-handed alpha
Helix 14
14
A
386 389Right-handed 310
Helix 15
15
A
392 403Right-handed alpha
Helix 16
16
A
404 409Right-handed 310
Helix 17
17
A
410 430Right-handed alpha
Helix 18
18
A
432 440Right-handed alpha
Helix 19
19
A
448 457Right-handed alpha
Helix 20
20
A
457 462Right-handed alpha
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There are 4 sheets in PDB entry 3RD8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
16 21anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 184first strand
Strand 2
A
187 193anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
257 258parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
390 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il