Analysis of interatomic Contacts of Structural Units in PDB entry:
3RDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RDE entry

There are 4 chains in PDB entry 3RDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 112ILE 663
B
 GLY 112ILE 663
C
 GLY 112ILE 663
D
 GLY 112ILE 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are119 helices in PDB entry 3RDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
125 140Right-handed alpha
Helix 2
2
A
157 161Right-handed 310
Helix 3
3
A
162 166Right-handed 310
Helix 4
4
A
168 194Right-handed alpha
Helix 5
5
A
200 208Right-handed 310
Helix 6
6
A
213 223Right-handed alpha
Helix 7
7
A
225 236Right-handed alpha
Helix 8
8
A
258 271Right-handed alpha
Helix 9
9
A
280 283Right-handed 310
Helix 10
10
A
337 359Right-handed alpha
Helix 11
11
A
365 380Right-handed alpha
Helix 12
12
A
384 391Right-handed alpha
Helix 13
13
A
392 395Right-handed 310
Helix 14
14
A
396 408Right-handed alpha
Helix 15
15
A
413 419Right-handed alpha
Helix 16
16
A
424 437Right-handed alpha
Helix 17
17
A
439 442Right-handed 310
Helix 18
18
A
443 451Right-handed alpha
Helix 19
19
A
459 484Right-handed alpha
Helix 20
20
A
486 492Right-handed alpha
Helix 21
21
A
493 506Right-handed alpha
Helix 22
22
A
511 515Right-handed 310
Helix 23
23
A
522 538Right-handed alpha
Helix 24
24
A
538 546Right-handed alpha
Helix 25
25
A
547 552Right-handed alpha
Helix 26
26
A
554 558Right-handed 310
Helix 27
27
A
573 581Right-handed alpha
Helix 28
28
A
583 599Right-handed alpha
Helix 29
29
A
617 644Right-handed alpha
Helix 30
30
B
116 120Right-handed 310
Helix 31
31
B
125 140Right-handed alpha
Helix 32
32
B
157 161Right-handed 310
Helix 33
33
B
162 166Right-handed 310
Helix 34
34
B
168 194Right-handed alpha
Helix 35
35
B
200 207Right-handed 310
Helix 36
36
B
213 223Right-handed alpha
Helix 37
37
B
225 236Right-handed alpha
Helix 38
38
B
258 272Right-handed alpha
Helix 39
39
B
280 283Right-handed 310
Helix 40
40
B
337 359Right-handed alpha
Helix 41
41
B
365 380Right-handed alpha
Helix 42
42
B
384 391Right-handed alpha
Helix 43
43
B
392 395Right-handed 310
Helix 44
44
B
396 408Right-handed alpha
Helix 45
45
B
413 419Right-handed alpha
Helix 46
46
B
424 436Right-handed alpha
Helix 47
47
B
439 442Right-handed 310
Helix 48
48
B
443 451Right-handed alpha
Helix 49
49
B
459 484Right-handed alpha
Helix 50
50
B
486 492Right-handed alpha
Helix 51
51
B
493 506Right-handed alpha
Helix 52
52
B
511 515Right-handed 310
Helix 53
53
B
522 538Right-handed alpha
Helix 54
54
B
538 546Right-handed alpha
Helix 55
55
B
547 552Right-handed alpha
Helix 56
56
B
554 558Right-handed 310
Helix 57
57
B
573 581Right-handed alpha
Helix 58
58
B
583 599Right-handed alpha
Helix 59
59
B
617 643Right-handed alpha
Helix 60
60
C
116 120Right-handed 310
Helix 61
61
C
125 140Right-handed alpha
Helix 62
62
C
157 161Right-handed 310
Helix 63
63
C
162 166Right-handed 310
Helix 64
64
C
168 194Right-handed alpha
Helix 65
65
C
200 208Right-handed 310
Helix 66
66
C
213 223Right-handed alpha
Helix 67
67
C
225 236Right-handed alpha
Helix 68
68
C
258 272Right-handed alpha
Helix 69
69
C
280 283Right-handed 310
Helix 70
70
C
337 359Right-handed alpha
Helix 71
71
C
365 380Right-handed alpha
Helix 72
72
C
384 391Right-handed alpha
Helix 73
73
C
392 395Right-handed 310
Helix 74
74
C
396 408Right-handed alpha
Helix 75
75
C
413 419Right-handed alpha
Helix 76
76
C
424 436Right-handed alpha
Helix 77
77
C
439 442Right-handed 310
Helix 78
78
C
443 451Right-handed alpha
Helix 79
79
C
459 484Right-handed alpha
Helix 80
80
C
486 492Right-handed alpha
Helix 81
81
C
493 506Right-handed alpha
Helix 82
82
C
511 515Right-handed 310
Helix 83
83
C
522 538Right-handed alpha
Helix 84
84
C
538 546Right-handed alpha
Helix 85
85
C
547 552Right-handed alpha
Helix 86
86
C
554 558Right-handed 310
Helix 87
87
C
573 581Right-handed alpha
Helix 88
88
C
583 599Right-handed alpha
Helix 89
89
C
617 643Right-handed alpha
Helix 90
90
D
116 120Right-handed 310
Helix 91
91
D
125 140Right-handed alpha
Helix 92
92
D
157 161Right-handed 310
Helix 93
93
D
162 166Right-handed 310
Helix 94
94
D
168 194Right-handed alpha
Helix 95
95
D
200 207Right-handed 310
Helix 96
96
D
213 223Right-handed alpha
Helix 97
97
D
225 236Right-handed alpha
Helix 98
98
D
258 272Right-handed alpha
Helix 99
99
D
280 283Right-handed 310
Helix 100
100
D
337 359Right-handed alpha
Helix 101
101
D
365 380Right-handed alpha
Helix 102
102
D
384 391Right-handed alpha
Helix 103
103
D
392 395Right-handed 310
Helix 104
104
D
396 408Right-handed alpha
Helix 105
105
D
413 419Right-handed alpha
Helix 106
106
D
424 435Right-handed alpha
Helix 107
107
D
439 442Right-handed 310
Helix 108
108
D
443 451Right-handed alpha
Helix 109
109
D
459 484Right-handed alpha
Helix 110
110
D
486 492Right-handed alpha
Helix 111
111
D
493 506Right-handed alpha
Helix 112
112
D
511 515Right-handed 310
Helix 113
113
D
522 538Right-handed alpha
Helix 114
114
D
538 546Right-handed alpha
Helix 115
115
D
547 552Right-handed alpha
Helix 116
116
D
554 558Right-handed 310
Helix 117
117
D
573 581Right-handed alpha
Helix 118
118
D
583 599Right-handed alpha
Helix 119
119
D
617 644Right-handed alpha
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There are 12 sheets in PDB entry 3RDE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
152 153anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
274 278anti-parallel
Strand 3
A
301 306anti-parallel
Strand 4
A
312 318anti-parallel
Strand 5
A
331 332anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
293 294anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
152 153anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 244first strand
Strand 2
B
274 278anti-parallel
Strand 3
B
301 306anti-parallel
Strand 4
B
312 318anti-parallel
Strand 5
B
331 332anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 290first strand
Strand 2
B
293 294anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 143first strand
Strand 2
C
152 153anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
243 244first strand
Strand 2
C
274 278anti-parallel
Strand 3
C
301 306anti-parallel
Strand 4
C
312 318anti-parallel
Strand 5
C
331 332anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 290first strand
Strand 2
C
293 294anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
142 143first strand
Strand 2
D
152 153anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
243 244first strand
Strand 2
D
274 278anti-parallel
Strand 3
D
301 306anti-parallel
Strand 4
D
312 318anti-parallel
Strand 5
D
331 332anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 290first strand
Strand 2
D
293 294anti-parallel
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