Analysis of interatomic Contacts of Structural Units in PDB entry:
3RDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RDR entry

There is 1 chain in PDB entry 3RDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLY 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3RDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 51Right-handed alpha
Helix 2
2
A
86 91Right-handed alpha
Helix 3
3
A
104 123Right-handed alpha
Helix 4
4
A
126 128Right-handed 310
Helix 5
5
A
133 138Right-handed alpha
Helix 6
6
A
145 147Right-handed 310
Helix 7
7
A
148 155Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3RDR.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
68 70parallel
Strand 3
A
61 63anti-parallel
Strand 4
A
92 97parallel
Strand 5
A
28 33parallel
Strand 6
A
130 132parallel
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