Analysis of interatomic Contacts of Structural Units in PDB entry:
3RDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3RDV entry

There are 8 chains in PDB entry 3RDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 57ARG 126
B
 ASP 57LYS 127
C
 ASP 57LYS 127
D
 ASP 56LYS 127
E
 ASP 574TYR 581
F
 ASP 574TYR 581
G
 SER 575TYR 581
H
 ASP 574TYR 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3RDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
120 122Right-handed 310
Helix 2
2
B
120 122Right-handed 310
Helix 3
3
C
120 122Right-handed 310
Helix 4
4
D
120 122Right-handed 310
Helix 5
5
E
574 578Right-handed 310
Helix 6
6
F
574 578Right-handed 310
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There are 8 sheets in PDB entry 3RDV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
70 78anti-parallel
Strand 4
A
63 66anti-parallel
Strand 5
A
124 125anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
106 107anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
87 92anti-parallel
Strand 3
B
70 78anti-parallel
Strand 4
B
63 66anti-parallel
Strand 5
B
124 126anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
106 107anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 119first strand
Strand 2
C
87 92anti-parallel
Strand 3
C
70 78anti-parallel
Strand 4
C
63 66anti-parallel
Strand 5
C
124 125anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 103first strand
Strand 2
C
106 107anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 119first strand
Strand 2
D
87 92anti-parallel
Strand 3
D
70 78anti-parallel
Strand 4
D
63 66anti-parallel
Strand 5
D
124 126anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 103first strand
Strand 2
D
106 107anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il